Bugzilla Bug 183879

This release benefits from lots of bug fixes and improvements.
Please test by downloading a .pdb file such as:
http://www.rcsb.org/pdb/download/downloadFile.do?fileFormat=pdb&compression=NO&structureId=2FEJ
and open it with pymol.

Thanks!
je_fro

There is a final release of pymol 1.0 avaible. Could there be build an ebuild
for this?

(In reply to comment #1)
> There is a final release of pymol 1.0 avaible. Could there be build an ebuild
> for this?
> 

Yes, but we won't discuss that on this stabilization bug. 
emerge --sync in a few hours.

ppc stable.

Compiles & works on AMD64 (tested with example)


Portage 2.1.2.9 (default-linux/amd64/2007.0/desktop, gcc-4.1.2, glibc-2.5-r3,
2.6.21-gentoo-r3 x86_64)
=================================================================
System uname: 2.6.21-gentoo-r3 x86_64 AMD Turion(tm) 64 X2 Mobile Technology
TL-56
Gentoo Base System release 1.12.9
Timestamp of tree: Mon, 02 Jul 2007 10:20:01 +0000
ccache version 2.4 [enabled]
dev-java/java-config: 1.3.7, 2.0.33-r1
dev-lang/python:     2.4.4-r4
dev-python/pycrypto: 2.0.1-r5
dev-util/ccache:     2.4-r7
sys-apps/sandbox:    1.2.17
sys-devel/autoconf:  2.13, 2.61
sys-devel/automake:  1.4_p6, 1.5, 1.6.3, 1.7.9-r1, 1.8.5-r3, 1.9.6-r2, 1.10
sys-devel/binutils:  2.17
sys-devel/gcc-config: 1.3.16
sys-devel/libtool:   1.5.23b
virtual/os-headers:  2.6.21
ACCEPT_KEYWORDS="amd64"
AUTOCLEAN="yes"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-march=athlon64 -O2 -msse3 -pipe"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/share/X11/xkb"
CONFIG_PROTECT_MASK="/etc/env.d /etc/env.d/java/ /etc/gconf /etc/revdep-rebuild
/etc/terminfo"
CXXFLAGS="-march=athlon64 -O2 -msse3 -pipe"
DISTDIR="/usr/portage/distfiles"
FEATURES="buildpkg ccache collision-protect distlocks fixpackages
metadata-transfer multilib-strict sandbox sfperms strict test userpriv"
GENTOO_MIRRORS="http://www.mirror.ac.uk/mirror/distro.ibiblio.org/pub/linux/distributions/gentoo
http://gentoo.virginmedia.com http://distfiles.gentoo.org
http://www.ibiblio.org/pub/Linux/distributions/gentoo"
LINGUAS="en en_GB"
MAKEOPTS="-j3"
PKGDIR="/usr/portage/packages"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress
--force --whole-file --delete --delete-after --stats --timeout=180
--exclude=/distfiles --exclude=/local --exclude=/packages
--filter=H_**/files/digest-*"
PORTAGE_TMPDIR="/var/tmp"
PORTDIR="/usr/portage"
PORTDIR_OVERLAY="/usr/portage/local/layman/enlightenment
/usr/portage/local/layman/sunrise /usr/portage/local"
SYNC="rsync://rsync.europe.gentoo.org/gentoo-portage"
USE="3dnow X Xaw3d a52 aac acpi alsa amd64 audiofile berkdb bitmap-fonts
branding bzip2 cairo cddb cdparanoia cdr cli cracklib cups curl dbus dri dts
dvb dvd dvdr dvdread emboss encode evo exif expat fam ffmpeg firefox foomaticdb
gdbm gif glitz gs gtk guile hal iconv icu imagemagick imlib isdnlog ithreads
java javascript jpeg libg++ libwww lirc logrotate mad midi mmap mmx mmxext mp3
msn mudflap ncurses nls nptl nptlonly nsplugin offensive ogg openal opengl
openmp pam pcre pdf perl png ppds pppd python qt3support qt4 readline
reflection sdl session sndfile spl sse sse2 ssl svg symlink tcl tcpd test
threads tiff tk truetype truetype-fonts type1-fonts unicode usb v4l v4l2 vorbis
x264 xcb xml xorg xosd xscreensaver xv zlib" ALSA_CARDS="hda-intel usb-audio"
ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file
hooks iec958 ioplug ladspa lfloat linear meter mulaw multi null plug rate route
share shm softvol" ELIBC="glibc" INPUT_DEVICES="keyboard mouse synaptics
ps2mouse evdev" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780
lb216 lcdm001 mtxorb ncurses text" LINGUAS="en en_GB" LIRC_DEVICES="mceusb2"
USERLAND="GNU" VIDEO_CARDS="nvidia"
Unset:  CTARGET, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LANG, LC_ALL, LDFLAGS,
PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS

x86 stable

amd64 done, thanks Simon