Some notes on ROOT: * The idea behind ROOT is that one can build a system with ROOT=/somewhere and then chroot into it or tar up /somewhere as a system image. It is not designed to allow the user to run /somewhere/usr/bin/foo. * ROOT can't be used correctly in src_*, since ROOT might be different when merging a binary package. For example, a binary package might be built with ROOT=/ and then installed onto a system using ROOT=/somewhere. * ROOT isn't used for library dependencies. When building, libraries, headers etc. on / have to be used. Cross-compiling etc is done by configuring the toolchain correctly, not by hacking ebuilds in a way that breaks binary packages. Summary of all mentioned herds: graphics kde sci sci-biology sci-chemistry QA checks for package directory /sci-biology/trnascan-se: /sci-biology/trnascan-se/trnascan-se-1.23-r1.ebuild 21: sed -e "s%BINDIR = \$(HOME)/bin%BINDIR = ${ROOT}/usr/bin%" \ 22: -e "s%LIBDIR = \$(HOME)/lib/tRNAscan-SE%LIBDIR = ${ROOT}/usr/lib/${PN}%" \ 23: -e "s%MANDIR = \$(HOME)/man%MANDIR = ${ROOT}/usr/share/man%" \ herds: sci-biology QA checks for package directory /sci-chemistry/caver: /sci-chemistry/caver/caver-0.99.2.ebuild 38: -e "s:^\(CAVER_BINARY_LOCATION\).*:\1 = \"${ROOT}usr/bin/caver\":g" \ /sci-chemistry/caver/caver-0.99.4.ebuild 48: sed -e "s:^\(CAVER_BINARY_LOCATION\).*:\1 = \"${ROOT}usr/bin/caver\":g" \ herds: sci-chemistry QA checks for package directory /sci-chemistry/ccp4: /sci-chemistry/ccp4/ccp4-6.0.1-r1.ebuild 250: -e "s:${S}:${ROOT}usr:g" \ 254: # -e "s:${S}:${ROOT}usr:g" \ /sci-chemistry/ccp4/ccp4-6.0.2.ebuild 220: -e "s:${S}:${ROOT}usr:g" \ 224: # -e "s:${S}:${ROOT}usr:g" \ herds: sci-chemistry QA checks for package directory /sci-chemistry/cns: /sci-chemistry/cns/cns-1.1.ebuild 82: -e "s:${S}:${ROOT}usr:g" \ 83: -e "s:^\(setenv CNS_SOLVE.*\):\1\nsetenv CNS_ROOT ${ROOT}usr:g" \ herds: sci-chemistry QA checks for package directory /sci-chemistry/coot: /sci-chemistry/coot/coot-0.1.2.ebuild 60: -e "s:/y/people/emsley/coot/Linux/bin/probe.2.11.050121.linux.RH9:${ROOT}usr/bin/probe:g" \ 61: -e "s:/y/people/emsley/coot/Linux/bin/reduce.2.21.030604:${ROOT}usr/bin/reduce:g" \ herds: sci-chemistry QA checks for package directory /sci-chemistry/eden: /sci-chemistry/eden/eden-5.3.ebuild 27: -e "s:^\(FFTW.*=\).*:\1 ${ROOT}usr:g" \ herds: sci-chemistry QA checks for package directory /sci-chemistry/maxit: /sci-chemistry/maxit/maxit-8.2.ebuild 38: -e "s:^\(GINCLUDE=\).*:\1-I${ROOT}usr/include/rcsb:g" \ 39: -e "s:^\(LIBDIR=\).*:\1${ROOT}usr/$(get_libdir):g" \ herds: sci-chemistry QA checks for package directory /sci-chemistry/pdb-extract: /sci-chemistry/pdb-extract/pdb-extract-1.700.ebuild 34: -e "s:^\(GINCLUDE=\).*:\1-I${ROOT}usr/include/rcsb:g" \ 35: -e "s:^\(LIBDIR=\).*:\1${ROOT}usr/$(get_libdir):g" \ herds: sci-chemistry QA checks for package directory /sci-chemistry/shelx: /sci-chemistry/shelx/shelx-20060317.ebuild 37: -e "s:CIFDIR='/usr/local/bin/':CIFDIR='${ROOT}usr/share/${PN}/':g" \ herds: sci-chemistry QA checks for package directory /sci-chemistry/sparky: /sci-chemistry/sparky/sparky-3.111.ebuild 67: -e "s:^\(set PYTHON[[:space:]]*=\).*:\1 ${ROOT}usr/bin/python${PYVER}:g" \ 68: -e "s:^\(setenv TCLTK_LIB[[:space:]]*\).*:\1 ${ROOT}usr/$(get_libdir):g" \ herds: sci-chemistry QA checks for package directory /sci-chemistry/validation: /sci-chemistry/validation/validation-6.2.ebuild 37: -e "s:^\(GINCLUDE=\).*:\1-I${ROOT}usr/include/rcsb:g" \ 38: -e "s:^\(LIBDIR=\).*:\1${ROOT}usr/$(get_libdir):g" \ herds: sci-chemistry QA checks for package directory /sci-libs/coot-data: /sci-libs/coot-data/coot-data-1.ebuild 28: COOT_REFMAC_LIB_DIR="${ROOT}usr/share/coot/lib" herds: sci-chemistry QA checks for package directory /sci-libs/rcsb-data: /sci-libs/rcsb-data/rcsb-data-1.700.ebuild 25: -e "s:^\(BINDIR=\).*:\1${ROOT}usr/bin:g" \ herds: sci-chemistry QA checks for package directory /sci-visualization/grace: /sci-visualization/grace/grace-5.1.20.ebuild 54: sed -i -e "s%doc/%${ROOT}usr/share/doc/${PF}/html/%g" src/* 55: sed -i -e "s%examples/%${ROOT}usr/share/doc/${PF}/examples/%g" src/xmgrace.c herds: graphics, sci QA checks for package directory /sci-visualization/labplot: /sci-visualization/labplot/labplot-1.5.1.3.ebuild 52: export QTDIR="${ROOT}/usr/qt/3" 53: export QWT3D_PATH="${ROOT}/usr" 54: export KEXIDB_DIR="${ROOT}/usr" /sci-visualization/labplot/labplot-1.5.1.4.ebuild 52: export QTDIR="${ROOT}/usr/qt/3" 53: export QWT3D_PATH="${ROOT}/usr" 54: export KEXIDB_DIR="${ROOT}/usr" herds: kde, sci
fixed all of them.
