Bugzilla Bug 165460

Emerge of version 2.8, 2.8-r1 or 2.8-r2 of graphviz throws up this
multiple-definition error. This is from 2.8-r2:

# emerge graphviz
[...]
x86_64-pc-linux-gnu-gcc -shared  .libs/gvrender.o .libs/gvlayout.o
.libs/gvtextlayout.o .libs/gvdevice.o .libs/gvcontext.o .libs/gvjobs.o
.libs/gvevent.o .libs/gvplugin.o .libs/gvconfig.o .libs/gvusershape.o
.libs/gvc.o -Wl,--whole-archive ../../lib/common/.libs/libcommon.a
-Wl,--no-whole-archive  -Wl,--rpath
-Wl,/tmp/portage/media-gfx/graphviz-2.8-r2/work/graphviz-2.8/lib/cdt/.libs
-Wl,--rpath
-Wl,/tmp/portage/media-gfx/graphviz-2.8-r2/work/graphviz-2.8/lib/graph/.libs
-Wl,--rpath
-Wl,/tmp/portage/media-gfx/graphviz-2.8-r2/work/graphviz-2.8/lib/pathplan/.libs
-Wl,--rpath -Wl,/usr/lib64/graphviz
-L/tmp/portage/media-gfx/graphviz-2.8-r2/work/graphviz-2.8/lib/cdt/.libs
../../lib/cdt/.libs/libcdt.so ../../lib/graph/.libs/libgraph.so
../../lib/pathplan/.libs/libpathplan.so -L/usr/lib64 /usr/lib64/libgd.so
/usr/lib64/libjpeg.so /usr/lib64/libfreetype.so /usr/lib64/libpng12.so -lm
/usr/lib64/libexpat.so -lz /usr/lib64/libltdl.so  -Wl,-soname
-Wl,libgvc_builtins.so.2 -o .libs/libgvc_builtins.so.2.0.0
../../lib/common/.libs/libcommon.a(utils.o):(.data.rel.local+0x0): multiple
definition of `entities'
../../lib/common/.libs/libcommon.a(htmllex.o):(.data.rel.local+0x0): first
defined here
collect2: ld returned 1 exit status
make[3]: *** [libgvc_builtins.la] Error 1
make[3]: *** Waiting for unfinished jobs....

I get the same if I say 'MAKEOPTS="-j1" emerge graphviz' instead.


Reproducible: Always




# emerge --info
Portage 2.1.2-r7 (default-linux/amd64/2006.1, gcc-4.1.1, glibc-2.5-r0,
2.6.19-gentoo-r5 x86_64)
=================================================================
System uname: 2.6.19-gentoo-r5 x86_64 AMD Opteron(tm) Processor 246
Gentoo Base System release 1.12.9
Timestamp of tree: Mon, 05 Feb 2007 05:50:01 +0000
ccache version 2.4 [enabled]
dev-lang/python:     2.4.4
dev-python/pycrypto: 2.0.1-r5
dev-util/ccache:     2.4-r6
sys-apps/sandbox:    1.2.18.1
sys-devel/autoconf:  2.13, 2.61
sys-devel/automake:  1.4_p6, 1.5, 1.6.3, 1.7.9-r1, 1.8.5-r3, 1.9.6-r2, 1.10
sys-devel/binutils:  2.17
sys-devel/gcc-config: 1.3.14
sys-devel/libtool:   1.5.22
virtual/os-headers:  2.6.19.2-r2
ACCEPT_KEYWORDS="amd64 ~amd64"
AUTOCLEAN="yes"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-O2 -pipe"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/kde/3.5/env /usr/kde/3.5/share/config
/usr/kde/3.5/shutdown /usr/share/X11/xkb /usr/share/config"
CONFIG_PROTECT_MASK="/etc/env.d /etc/gconf /etc/revdep-rebuild /etc/terminfo
/etc/texmf/web2c"
CXXFLAGS="-O2 -pipe"
DISTDIR="/usr/portage/distfiles"
FEATURES="autoconfig buildpkg ccache distlocks fixpackages metadata-transfer
parallel-fetch sandbox sfperms strict userfetch userpriv usersandbox"
GENTOO_MIRRORS="http://gentoo.blueyonder.co.uk        
http://ftp.easynet.nl/mirror/gentoo         http://trumpetti.atm.tut.fi/gentoo/
        ftp://sunsite.informatik.rwth-aachen.de/pub/Linux/gentoo        
http://distfiles.gentoo.org"
LANG="en_GB.UTF-8"
LC_ALL="en_GB.UTF-8"
LINGUAS="en_GB"
MAKEOPTS="-j5"
PKGDIR="/usr/portage/packages"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress
--force --whole-file --delete --delete-after --stats --timeout=180
--exclude=/distfiles --exclude=/local --exclude=/packages"
PORTAGE_TMPDIR="/tmp"
PORTDIR="/usr/portage"
PORTDIR_OVERLAY="/usr/local/portage"
SYNC="rsync://gate.prhnet/gentoo-portage"
USE="X aalib acpi alsa amd64 arts bash-completion berkdb bitmap-fonts bzip2
cairo cdr cli cracklib crypt cups dbus dlloader dri dvd dvdr fam firefox
fortran gdbm gif gimp gpm graphviz gs iconv ipv6 ithreads javascript jpeg
jpeg2k kde kdeenablefinal lcms libg++ lm_sensors logitech-mouse logrotate midi
mng mp3 mpeg ncurses nls nptl nptlonly nvidia ogg opengl pam pcre pdf perl png
ppds pppd python qt3 qt4 readline reflection samba sample scanner sdl session
smp spell spl ssl svg tcpd tetex tiff truetype truetype-fonts type1-fonts udev
unicode usb userlocales vorbis wmf xcomposite xml xml2 xorg zlib"
ALSA_CARDS="via82xx" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop
empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mulaw multi
null plug rate route share shm softvol" CAMERAS="fuji" ELIBC="glibc"
INPUT_DEVICES="keyboard mouse" KERNEL="linux" LCD_DEVICES="bayrad cfontz
cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LINGUAS="en_GB"
USERLAND="GNU" VIDEO_CARDS="nv nvidia"
Unset:  CTARGET, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LDFLAGS,
PORTAGE_RSYNC_EXTRA_OPTS

same here

emerge --info
Portage 2.1.2-r8 (default-linux/x86/2006.1/desktop, gcc-4.1.1, glibc-2.5-r0,
2.6.19-beyond3 i686)
=================================================================
System uname: 2.6.19-beyond3 i686 Intel(R) Pentium(R) 4 CPU 2.80GHz
Gentoo Base System release 1.12.9
Timestamp of tree: Tue, 06 Feb 2007 11:50:01 +0000
dev-java/java-config: 1.3.7, 2.0.31-r3
dev-lang/python:     2.5-r1
dev-python/pycrypto: 2.0.1-r5
sys-apps/sandbox:    1.2.18.1
sys-devel/autoconf:  2.13, 2.61
sys-devel/automake:  1.4_p6, 1.5, 1.6.3, 1.7.9-r1, 1.8.5-r3, 1.9.6-r2, 1.10
sys-devel/binutils:  2.17.50.0.9
sys-devel/gcc-config: 1.3.14
sys-devel/libtool:   1.5.22
virtual/os-headers:  2.6.20
ACCEPT_KEYWORDS="~x86"
ARCH="x86"
AUTOCLEAN="yes"
CBUILD="i686-pc-linux-gnu"
CCACHE_DIR="/var/ccache"
CFLAGS="-march=pentium4 -Os -pipe -fomit-frame-pointer -funit-at-a-time
-freorder-blocks -freorder-blocks-and-partition -fno-ident"
CG_COMPILER_EXE="/usr/bin/cgc"
CHOST="i686-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/kde/3.5/env /usr/kde/3.5/share/config
/usr/kde/3.5/shutdown /usr/share/X11/xkb /usr/share/config"
CONFIG_PROTECT_MASK="/etc/env.d /etc/env.d/java/ /etc/gconf
/etc/java-config/vms/ /etc/revdep-rebuild /etc/terminfo /etc/texmf/web2c"
CXXFLAGS="-march=pentium4 -Os -pipe -fomit-frame-pointer -funit-at-a-time
-freorder-blocks -freorder-blocks-and-partition -fno-ident"
ELIBC="glibc"
GENTOO_MIRRORS="http://mirrors.sec.informatik.tu-darmstadt.de/gentoo/
http://ftp-stud.fht-esslingen.de/pub/Mirrors/gentoo/ "
LDFLAGS="-Wl,-O1 -Wl,--sort-common -s"
LINGUAS="pl de en_GB en"
SYNC="rsync://rsync.europe.gentoo.org/gentoo-portage"
USE="X aalib acpi alsa amarok audiofile avahi bash-completion berkdb
bitmap-fonts bzip2 cairo caps cdr cdrw cli cracklib crypt cups curl dbus dga
directfb dlloader dri dvd dvdr dvdread eds emboss encode exif extraicons
extramodules fam fbcon firefox flac fortran gdbm ggi gif glitz glut gnutls gpm
gtk gtk+ hal iconv ieee1394 imlib insecure-savers ipv6 isdnlog java jbig john
jpeg jpeg2k jython kde kdehiddenvisibility kscreensaver libcaca libg++ lua lzo
mad mbox midi mikmod mmap mmx modplug motif mp3 mpeg ncurses nls nptl nptlonly
nsplugin ogg openexr opengl oss pam pcmcia pcre pdf perl pertty png ppds pppd
python qt qt3 quicktime readline real reflection rhino ruby sasl sdl session
slang smime spell spl sqlite sse sse2 ssl svg sysfs tcpd tetex threads tiff tk
truetype truetype-fonts type1-fonts udev unicode urandom usb vorbis win32codecs
x264 x86 xcb xcomposite xft xine xinerama xinetd xml xorg xscreensaver xv zlib"
ALSA_CARDS="intel8x0 intel8x0m"
VIDEO_CARDS="nv nvidia fbdev nouveau"

Me 2.

Portage 2.1.2-r7 (default-linux/amd64/2006.1/desktop, gcc-4.1.1, glibc-2.5-r0,
2.6.19-gentoo-r4 x86_64)
=================================================================
System uname: 2.6.19-gentoo-r4 x86_64 AMD Athlon(tm) 64 X2 Dual Core Processor
3800+
Gentoo Base System release 1.12.9
Timestamp of tree: Sun, 04 Feb 2007 21:50:01 +0000
dev-lang/python:     2.4.4
dev-python/pycrypto: 2.0.1-r5
sys-apps/sandbox:    1.2.17
sys-devel/autoconf:  2.13, 2.61
sys-devel/automake:  1.4_p6, 1.5, 1.6.3, 1.7.9-r1, 1.8.5-r3, 1.9.6-r2, 1.10
sys-devel/binutils:  2.17
sys-devel/gcc-config: 1.3.14
sys-devel/libtool:   1.5.22
virtual/os-headers:  2.6.19.2-r2
ACCEPT_KEYWORDS="amd64 ~amd64"
AUTOCLEAN="yes"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-march=athlon64 -O2 -pipe"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/kde/3.5/env /usr/kde/3.5/share/config
/usr/kde/3.5/shutdown /usr/share/X11/xkb /usr/share/config"
CONFIG_PROTECT_MASK="/etc/env.d /etc/gconf /etc/revdep-rebuild /etc/terminfo"
CXXFLAGS="-march=athlon64 -O2 -pipe"
DISTDIR="/usr/portage/distfiles"
FEATURES="autoconfig distlocks metadata-transfer parallel-fetch sandbox sfperms
strict"
GENTOO_MIRRORS="http://distfiles.gentoo.org
http://distro.ibiblio.org/pub/linux/distributions/gentoo"
LINGUAS="en_GB"
MAKEOPTS="-j3"
PKGDIR="/usr/portage/packages"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress
--force --whole-file --delete --delete-after --stats --timeout=180
--exclude=/distfiles --exclude=/local --exclude=/packages"
PORTAGE_TMPDIR="/var/tmp"
PORTDIR="/usr/portage"
SYNC="rsync://rsync.europe.gentoo.org/gentoo-portage"
USE="X alsa amd64 berkdb bitmap-fonts cairo cdinstall cdparanoia cdr cdrom cli
cracklib crypt cvs dbus deprecated divx dlloader dvd dvdr dvdread eds emboss
encode fam firefox fortran gdbm gif gmedia gphoto2 gpm graphviz gtk gtk2 hal
history iconv imlib jpeg kde libg++ libsamplerate live lm_sensors mad midi
mikmod mp3 mpeg ncurses nls nptl nptlonly nvidia ofx ogg openal opengl oss pam
pcre perl png ppds pppd python qt3 qt4 quicktime quotes readline realmedia
reflection sdl session smp spell spl sql ssl subversion svg tcpd theora
truetype truetype-fonts type1-fonts udev unicode usb vorbis wmp xcomposite xml
xorg xscreensaver xv zlib" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem
bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel
intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci"
ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file
hooks iec958 ioplug ladspa lfloat linear meter mulaw multi null plug rate route
share shm softvol" ELIBC="glibc" INPUT_DEVICES="keyboard mouse joystick evdev"
KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001
mtxorb ncurses text" LINGUAS="en_GB" USERLAND="GNU" VIDEO_CARDS="nvidia"
Unset:  CTARGET, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LANG, LC_ALL, LDFLAGS,
PORTAGE_RSYNC_EXTRA_OPTS, PORTDIR_OVERLAY

I get the same issue on ~amd64...

emerge --info:

Portage 2.1.2-r8 (default-linux/amd64/2006.1, gcc-4.1.1, glibc-2.5-r0,
2.6.18-gentoo-r1 x86_64)
=================================================================
System uname: 2.6.18-gentoo-r1 x86_64 AMD Athlon(tm) 64 X2 Dual Core Processor
4400+
Gentoo Base System version 1.12.9
Timestamp of tree: Wed, 07 Feb 2007 16:30:01 +0000
dev-java/java-config: 1.3.7, 2.0.31-r3
dev-lang/python:     2.4.4
dev-python/pycrypto: 2.0.1-r5
sys-apps/sandbox:    1.2.18.1
sys-devel/autoconf:  2.13, 2.61
sys-devel/automake:  1.4_p6, 1.5, 1.6.3, 1.7.9-r1, 1.8.5-r3, 1.9.6-r2, 1.10
sys-devel/binutils:  2.17
sys-devel/gcc-config: 1.3.14
sys-devel/libtool:   1.5.22
virtual/os-headers:  2.6.20
ACCEPT_KEYWORDS="amd64 ~amd64"
AUTOCLEAN="yes"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-march=athlon64 -O2 -pipe -funroll-loops -msse3"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc /opt/openjms/config /usr/kde/3.5/env
/usr/kde/3.5/share/config /usr/kde/3.5/shutdown /usr/lib/fax /usr/share/X11/xkb
/usr/share/config /var/spool/fax/etc"
CONFIG_PROTECT_MASK="/etc/env.d /etc/env.d/java/ /etc/gconf
/etc/java-config/vms/ /etc/revdep-rebuild /etc/terminfo /etc/texmf/web2c"
CXXFLAGS="-march=athlon64 -O2 -pipe -funroll-loops -msse3"
DISTDIR="/usr/portage/distfiles"
FEATURES="autoconfig distlocks metadata-transfer sandbox sfperms strict"
GENTOO_MIRRORS="http://gentoo.osuosl.org http://distfiles.gentoo.org
http://www.ibiblio.org/pub/Linux/distributions/gentoo"
LINGUAS="en en_US"
MAKEOPTS="-j3"
PKGDIR="/usr/portage/packages"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress
--force --whole-file --delete --delete-after --stats --timeout=180
--exclude=/distfiles --exclude=/local --exclude=/packages"
PORTAGE_TMPDIR="/var/tmp"
PORTDIR="/usr/portage"
PORTDIR_OVERLAY="/usr/local/portage"
SYNC="rsync://rsync.gentoo.org/gentoo-portage"
USE="16bit-indices 3ds 64bit 7zip X Xaw3d a52 aac aalib accessibility acct acl
acpi ada addbookmarks aiglx aio akode alias allegro alsa altenburgcards amarok
amd64 amr animgif ansi ao aoss apache2 arj artworkextra asf async auctex
audiofile automount autoreplace avahi avalon-framework avalon-logkit badval
bash-completion battery bcmath bcp beagle berkdb bidi binfilter bitmap-fonts
bittorrent bjam blas bookmarks boost branding bzip2 c3p0 cairo cal3d calendar
caps cdaudio cddb cdparanoia cdr cegui cg chipcard chm chroot cjk clearcase cli
clisp connectionstatus contactnotes cpudetection cpufreq cracklib crypt cscope
css ctype cups curl curlwrappers custom-cflags cvs dbus demo deprecated devhelp
device-mapper devil dga directfb discouraged diskio divx djvu dlloader dmi doc
dom4j double-precision dri dtaus dts dv dvb dvd dvdr dvdread dvi editor eds elf
elisp enca encode epydoc evo examples exif expat extraengine extrafilters fam
fame fastbuild fat fbcon ffmpeg fftw fidonet firefox fits flac flatfile fmod
fontconfig foomaticdb fortran fpx freetds frontendonly ftp fuse gadu galago gcj
gcl gd gdbm gdl gedit geldkarte geoip geos ggi gif gimp ginac glade glib glitz
glut glw gmath gmedia gml gmp gnokii gnome gnutls gphoto2 gpm gps graphviz
groupwise gs gsm gstreamer gtk gtk2 gtkhtml gtp guile hacking hal
hardware-carrier hash haskell hbci hdf hdf5 hfs highlight history hlapi hpn
html ical iconv idl idn ieee1394 ifp ilbc imagemagick imap imlib inherit-graph
inifile insecure-savers ipod ipv6 irc irda isdnlog ithreads itrax jack java
java5 javamail javascript jbig jce jfs jikes jingle jms jmx jni jpeg jpeg2k
jython kcal kde kdecards kdeenablefinal kdehiddenvisibility kerberos keyring
kig-scripting lame largefile latex lcms ldap ldb lesstif lha libburn libcaca
libedit libg++ libnotify libsexy libwww lirc live lm_sensors log4j
logitech-mouse logrotate lua lzo mad matroska mdb memlimit metalink mgetty
mhash midi mikmod mime ming mixer mjpeg mmap mng modplug module mono mopac7
motif mozbranding mozdevelop moznopango mp3 mp3rtp mpeg mpi mplayer
mpm-threadpool mpqc mssql mt940 mtp muine musepack music musicbrainz mysql nas
ncurses net netboot netcdf netjack netmeeting network networking new-clx
new-login nfs nis njb nls nntp nowlistening nptl nptlonly nsplugin ntfs ntp
numeric oav objc objc++ objc-gc ocaml oci8 odbc ode odk offensive ofx ogdi ogg
ole openal openbabel openexr opengl oracle oss pam pam_chroot pam_console
pam_timestamp pascal pcmcia pcntl pcre pda pdf pdo perforce perl php physfs
pike plotutils plugins png portaudio posix postgres povray ppds pppd
preview-latex proteus pwdb pysolcards pyste python qdbm qhull qt3 qt3support
qt4 quicktime quotas quotes rar rdesktop readline real realmedia recode
reflection regex reiser4 reiserfs remix rhino rle rpm rt2500pci rtc ruby samba
sametime sasl savedconfig sbcl scanner scenarios script sdl sensord serial
serpentine server servletapi session sftp sharedext sharedmem simplexml skey
slang slp smp sms sndfile snmp soap sockets socks5 sound sounds source
sourceview sox speex spell spl sql sqlite sqlite3 srt ssl startup-notification
staticsocket statistics streamripper subversion svg swat sysfs syslog sysvipc
szip t1lib tcl tcltk tcpd tetex texteffect tga theora threads thunar-vfs tidy
tiff timidity tk tntc tokenizer toolbar tordns totem translator transmitter
truetype truetype-fonts type1-fonts udev unicode urandom usb utempter v4l v4l2
valgrind vcd vim vim-pager vim-syntax vim-with-x visualization voice vorbis
wavpack webdav webpresence wifi winbind winpopup wireshark wlan wmf wmp
workbench wxgtk1 wxwindows x264 xanim xbase xcb xcomposite xerces-c xforms xfs
xine xinerama xml xmldoclet xmlreader xmlrpc xmlwriter xorg xpm xprint
xscreensaver xskatcards xsl xtended xv xvid xvmc yahoo yaz yv12 zeroconf zip
zippy zlib zrtp" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106
cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0
intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci"
ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file
hooks iec958 ioplug ladspa lfloat linear meter mulaw multi null plug rate route
share shm softvol" ELIBC="glibc" INPUT_DEVICES="synaptics evdev mouse keyboard"
KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001
mtxorb ncurses text" LINGUAS="en en_US" LIRC_DEVICES="serial" USERLAND="GNU"
VIDEO_CARDS="nvidia nv"
Unset:  CTARGET, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LANG, LC_ALL, LDFLAGS,
PORTAGE_RSYNC_EXTRA_OPTS

(And yes, I know - Holy USE flag overkill, Batman!)

-James

Created an attachment (id=109562) [details]
emerge --info

me too (please hurry, this is blocking installation of my base system; I need
fix or at least workaround ASAP for my fresh install)

echo "
=media-gfx/graphviz-2.8-r2
=media-gfx/graphviz-2.8-r1
=media-gfx/graphviz-2.8
">> /etc/portage/package.mask

worked for me.

downloading media media-libs/gd to stable version (2.0.33) soved problem for me

also upgrading to graphviz 2.12 fixes the issue and some other too, the ebuild
can be found at Bug #161302

I have this bug too.
How is it possible media-gfx/graphviz-2.8-r2 came in the stable tree last night
and so mutch bugs are still opened ?

(In reply to comment #8)
> media-gfx/graphviz-2.8-r2 came in the stable tree last night

sorry, false, not new in the tree but ebuild changed, and graphviz doesn't
compile anymore.

(In reply to comment #6)
> downloading media media-libs/gd to stable version (2.0.33) soved problem for me
> 
graphviz-2.8-r2 merges correctly with media-libs/gd-2.0.33. But the latest
stable is media-libs/gd-2.0.34 now, and the intial symptoms of this bugs showed
up again. Port those changes of media-libs/gd made graphviz to compile with
2.0.33 to gd-2.0.34 also, please.

Regards,
Dw.

*** Bug 166376 has been marked as a duplicate of this bug. ***

(In reply to comment #5)
> echo "
> =media-gfx/graphviz-2.8-r2
> =media-gfx/graphviz-2.8-r1
> =media-gfx/graphviz-2.8
> ">> /etc/portage/package.mask
> 
> worked for me.
> 
Yes but:

1. I don't want to downgrade permanently. I need graphviz, so I'll do what I
have to, but the bug(s) should get fixed.

2. As someone posted, there's a bug to get 2.12 in the tree, Bug #161302. That
should happen too. 

*** Bug 166416 has been marked as a duplicate of this bug. ***

*** Bug 166377 has been marked as a duplicate of this bug. ***

Same problem...

emerge --info
Portage 2.1.2-r9 (default-linux/x86/2006.0, gcc-3.4.6, glibc-2.5-r0,
2.6.18-gentoo-r6 i686)
=================================================================
System uname: 2.6.18-gentoo-r6 i686 AMD Athlon(tm) XP 2100+
Gentoo Base System version 1.12.6
Timestamp of tree: Mon, 12 Feb 2007 06:20:02 +0000
ccache version 2.4 [enabled]
dev-lang/python:     2.4.3-r4
dev-python/pycrypto: 2.0.1-r5
dev-util/ccache:     2.4-r6
sys-apps/sandbox:    1.2.17
sys-devel/autoconf:  2.13, 2.61
sys-devel/automake:  1.4_p6, 1.5, 1.6.3, 1.7.9-r1, 1.8.5-r3, 1.9.6-r2, 1.10
sys-devel/binutils:  2.16.1-r3
sys-devel/gcc-config: 1.3.14
sys-devel/libtool:   1.5.22
virtual/os-headers:  2.6.17-r2
ACCEPT_KEYWORDS="x86"
AUTOCLEAN="yes"
CBUILD="i686-pc-linux-gnu"
CFLAGS="-O3 -march=athlon-xp -pipe -fomit-frame-pointer"
CHOST="i686-pc-linux-gnu"
CONFIG_PROTECT="/etc"
CONFIG_PROTECT_MASK="/etc/env.d /etc/gconf /etc/revdep-rebuild /etc/terminfo"
CXXFLAGS="-O3 -march=athlon-xp -pipe -fomit-frame-pointer"
DISTDIR="/usr/portage/distfiles"
FEATURES="autoconfig ccache distlocks metadata-transfer sandbox sfperms strict"
GENTOO_MIRRORS="http://ftp.linux.ee/pub/gentoo/distfiles/
http://trumpetti.atm.tut.fi/gentoo/ "
LINGUAS="en ru"
MAKEOPTS="-j2"
PKGDIR="/usr/portage/packages"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress
--force --whole-file --delete --delete-after --stats --timeout=180
--exclude=/distfiles --exclude=/local --exclude=/packages"
PORTAGE_TMPDIR="/var/tmp"
PORTDIR="/usr/portage"
PORTDIR_OVERLAY="/usr/src/MYEBILDS"
SYNC="rsync://rsync.europe.gentoo.org/gentoo-portage"
USE="alsa apache2 apm arts async berkdb bitmap-fonts bzip2 cli cracklib crypt
daemon dlloader dri eds emboss encode esd extensions foomaticdb fortran gdbm
gif gnome gstreamer gtk2 iconv imlib ipv6 isdnlog jpeg kde l7filter libg++
libwww lm_sensors logrotate mad midi mikmod mmap motif mp3 mpeg mysql ncurses
nls nptl nptlonly ogg opengl oss pam pcre perl png pppd python qt3 qt4
quicktime readline reflection search session snmp sockets spl ssl tcpd tools
truetype truetype-fonts type1-fonts udev unicode vorbis x86 xml xorg xv zlib"
ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1
emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m
maestro3 trident usb-audio via82xx via82xx-modem ymfpci"
ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file
hooks iec958 ioplug ladspa lfloat linear meter mulaw multi null plug rate route
share shm softvol" ELIBC="glibc" INPUT_DEVICES="keyboard mouse evdev"
KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001
mtxorb ncurses text" LINGUAS="en ru" USERLAND="GNU" VIDEO_CARDS="apm ark ati
chips cirrus cyrix dummy fbdev glint i128 i740 i810 imstt mga neomagic nsc nv
rendition s3 s3virge savage siliconmotion sis sisusb tdfx tga trident tseng v4l
vesa vga via vmware voodoo"
Unset:  CTARGET, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LANG, LC_ALL, LDFLAGS,
PORTAGE_RSYNC_EXTRA_OPTS

Problem occurs, because static array entities is declared & defined inside
lib/gd/entities.h, what in turn is included in lib/common/{htmllex,utils}.c.

Quick hack (idea):

Since lib/gd/entities.h is created from lib/gd/entities.tcl using
lib/gd/entities.html, I modified lib/gd/entities.tcl and one of the *.c files:

lib/gd/entities.tcl creates lib/gd/entities.h with inclusion of
lib/gd/entities_ext.h and the definition of the array and lib/gd/entities_ext.h
with only the declaration - so only one *.c file shall include
lib/gd/entities.h and so have the array defined, while all others use the
..._ext.h.

Didn't work, since graphviz uses /usr/include/entities.h, what in turn is
created from media-libs/gd

*** Bug 166493 has been marked as a duplicate of this bug. ***

(In reply to comment #12)
> 1. I don't want to downgrade permanently. I need graphviz, so I'll do what I
> have to, but the bug(s) should get fixed.

I only downed to media-gfx/graphviz-2.6-r1 (the one before 2.8 in my tree).
Exacte version matching will let portage try 2.8-r3 when it comes out ... I
just said what worked for me in order to solve deps, and continue installing my
system (new installation on new disk; this was blocking hardly things I
needed).

> 2. As someone posted, there's a bug to get 2.12 in the tree, Bug #161302. That
> should happen too. 

Strange: I esynced 2 days ago, and I cant see any 2.12 in
/usr/portage/media-gfx/graphviz/ was it a typo vs 1.12 ?

This bug seems to have been introduced with opfer's move from IUSE=tcltk to
IUSE="tcl tk" (on all current graphviz ebuilds, without a revision bump).
Emerging with USE="-tcl -tk" works for me, it seems. CC'ing opfer for his view
on the matter.

I changed the ebuilds on 10 Feb, this bug was reported on 5 Feb...so I don't
have anything to do with it.  As reported in comment #6, media-libs/gd is
responsible.

(In reply to comment #19)
> This bug seems to have been introduced with opfer's move from IUSE=tcltk to
> IUSE="tcl tk" (on all current graphviz ebuilds, without a revision bump).
> Emerging with USE="-tcl -tk" works for me, it seems. CC'ing opfer for his view
> on the matter.

I think this is not the issue here, since I have:

[ebuild   R   ] media-gfx/graphviz-2.8-r2  USE="X cairo -guile java -lua -ocaml
perl -php python -ruby -static -tcl% (-tcltk%) -tk%" 4,144 kB 

and the compilation fails on this linking problem:

../../lib/common/.libs/libcommon.a(utils.o):(.data.rel.local+0x0): multiple
definition of `entities'
../../lib/common/.libs/libcommon.a(htmllex.o):(.data.rel.local+0x0): first
defined here
collect2: ld returned 1 exit status
make[3]: *** [libgvc.la] Błąd 1
make[2]: *** [all-recursive] Błąd 1
make[1]: *** [all-recursive] Błąd 1
make: *** [all] Błąd 2

I say same as #21:
[ebuild     U ] media-gfx/graphviz-2.8-r2 [2.6-r1] USE="X perl%* python%*
-cairo -guile% -java% -lua% -ocaml% -php% -ruby% -static -tcl -tk" 0 kB
=>
../../lib/common/.libs/libcommon.a(utils.o):(.data.rel.local+0x0): multiple
definition of `entities'
../../lib/common/.libs/libcommon.a(htmllex.o):(.data.rel.local+0x0): first
defined here
collect2: ld returned 1 exit status

(In reply to comment #20)
> I changed the ebuilds on 10 Feb, this bug was reported on 5 Feb...so I don't
> have anything to do with it.  As reported in comment #6, media-libs/gd is
> responsible.

OK, I wasn't laying the blame on you. I just guessed changing IUSE on a stable
ebuild would trigger a rebuild for everyone doing an emerge --update --newuse
world. And somehow, your tests didn't find this issue.

the entities.h header is the same between gd-2.0.33 and gd-2.0.34

quick fix:
cd /usr/portage/media-gfx/graphviz
edit graphviz-2.8-r2.ebuild and put on the line before "emake" on line 84:
   (cd "${S}/lib/gd"; entities.tcl)

run "ebuild graphviz-2.8-r2.ebuild digest" && emerge graphviz


background:
entities.tcl is the script that generated entities.h (according to the
comments), but it isn't run every time a build is made, and the included
entities.h is wrong.

(In reply to comment #25)
> quick fix:
> cd /usr/portage/media-gfx/graphviz
> edit graphviz-2.8-r2.ebuild and put on the line before "emake" on line 84:
>    (cd "${S}/lib/gd"; entities.tcl)
> 
> run "ebuild graphviz-2.8-r2.ebuild digest" && emerge graphviz

This did not work for me - I still get the same build error.

(In reply to comment #25)
> quick fix:
> cd /usr/portage/media-gfx/graphviz
> edit graphviz-2.8-r2.ebuild and put on the line before "emake" on line 84:
>    (cd "${S}/lib/gd"; entities.tcl)
> run "ebuild graphviz-2.8-r2.ebuild digest" && emerge graphviz
> background:
> entities.tcl is the script that generated entities.h (according to the
> comments), but it isn't run every time a build is made, and the included
> entities.h is wrong.

It's not work for me too...

(In reply to comment #26)
> (In reply to comment #25)
> > quick fix:
> > cd /usr/portage/media-gfx/graphviz
> > edit graphviz-2.8-r2.ebuild and put on the line before "emake" on line 84:
> >    (cd "${S}/lib/gd"; entities.tcl)
> > 
> > run "ebuild graphviz-2.8-r2.ebuild digest" && emerge graphviz
> 
> This did not work for me - I still get the same build error.
> 

So do I, the newly generated file is the same as original. I tried to
redownload entities.html from W3C, but it's the same too.

*** Bug 166562 has been marked as a duplicate of this bug. ***

I copied entities.h from Graphviz to GD and now both compile. The important
difference is probably "static" keyword in declaration of array "entities", so
the symbol is not exported and does not collide with Graphviz. But it may break
some else package.

Version 2.12 which fixes this issue is now in the tree.
Graphics Team: I think it makes sense to keep this bug open until 2.12 goes
stable.

(In reply to comment #25)
> quick fix:
> cd /usr/portage/media-gfx/graphviz
> edit graphviz-2.8-r2.ebuild and put on the line before "emake" on line 84:
>    (cd "${S}/lib/gd"; entities.tcl)
> 
> run "ebuild graphviz-2.8-r2.ebuild digest" && emerge graphviz
> 
> background:
> entities.tcl is the script that generated entities.h (according to the
> comments), but it isn't run every time a build is made, and the included
> entities.h is wrong.

At least for me, entities.h from /usr/include (the one installed from gd) is
used - .../lib/gd is never -I'ed at compile time.

Same problem here with media-gfx/graphviz-2.8-r2:

../../lib/common/.libs/libcommon.a(utils.o):(.data.rel.local+0x0): multiple
definition of `entities'
../../lib/common/.libs/libcommon.a(htmllex.o):(.data.rel.local+0x0): first
defined here
collect2: ld returned 1 exit status
make[3]: *** [libgvc.la] Error 1
make[3]: *** Se espera a que terminen otras tareas....
../../lib/common/.libs/libcommon.a(utils.o):(.data.rel.local+0x0): multiple
definition of `entities'
../../lib/common/.libs/libcommon.a(htmllex.o):(.data.rel.local+0x0): first
defined here
collect2: ld returned 1 exit status
make[3]: *** [libgvc_builtins.la] Error 1
make[3]: se sale del directorio
`/var/tmp/portage/media-gfx/graphviz-2.8-r2/work/graphviz-2.8/lib/gvc'
make[2]: *** [all-recursive] Error 1
make[2]: se sale del directorio
`/var/tmp/portage/media-gfx/graphviz-2.8-r2/work/graphviz-2.8/lib'
make[1]: *** [all-recursive] Error 1
make[1]: se sale del directorio
`/var/tmp/portage/media-gfx/graphviz-2.8-r2/work/graphviz-2.8'
make: *** [all] Error 2

My emerge --info:
Portage 2.1.2-r9 (default-linux/x86/2006.1, gcc-4.1.1, glibc-2.5-r0,
2.6.20-gentoo i686)
=================================================================
System uname: 2.6.20-gentoo i686 Genuine Intel(R) CPU           T2300  @
1.66GHz
Gentoo Base System release 1.12.9
Timestamp of tree: Tue, 13 Feb 2007 20:20:01 +0000
ccache version 2.4 [enabled]
dev-java/java-config: 1.3.7, 2.0.31
dev-lang/python:     2.4.3-r4
dev-python/pycrypto: 2.0.1-r5
dev-util/ccache:     2.4-r6
sys-apps/sandbox:    1.2.17
sys-devel/autoconf:  2.13, 2.61
sys-devel/automake:  1.4_p6, 1.5, 1.6.3, 1.7.9-r1, 1.8.5-r3, 1.9.6-r2, 1.10
sys-devel/binutils:  2.16.1-r3
sys-devel/gcc-config: 1.3.14
sys-devel/libtool:   1.5.22
virtual/os-headers:  2.6.17-r2
ACCEPT_KEYWORDS="x86"
AUTOCLEAN="yes"
CBUILD="i686-pc-linux-gnu"
CFLAGS="-O2 -march=pentium-m -pipe -fomit-frame-pointer -mfpmath=sse -msse3"
CHOST="i686-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/kde/3.5/env /usr/kde/3.5/share/config
/usr/kde/3.5/shutdown /usr/share/X11/xkb /usr/share/config"
CONFIG_PROTECT_MASK="/etc/env.d /etc/env.d/java/ /etc/gconf
/etc/java-config/vms/ /etc/revdep-rebuild /etc/splash /etc/terminfo
/etc/texmf/web2c"
CXXFLAGS="-O2 -march=pentium-m -pipe -fomit-frame-pointer -mfpmath=sse -msse3"
DISTDIR="/usr/portage/distfiles"
FEATURES="autoconfig ccache distlocks fixpackages metadata-transfer
parallel-fetch sandbox sfperms strict"
GENTOO_MIRRORS="http://mirror.ovh.net/gentoo-distfiles/ "
LC_ALL="es_ES.UTF-8"
LINGUAS="es en_US"
MAKEOPTS="-j3"
PKGDIR="/usr/portage/packages"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress
--force --whole-file --delete --delete-after --stats --timeout=180
--exclude=/distfiles --exclude=/local --exclude=/packages"
PORTAGE_TMPDIR="/var/tmp"
PORTDIR="/usr/portage"
PORTDIR_OVERLAY="/usr/portage/local/layman/armagetron
/usr/portage/local/layman/sunrise /usr/local/portage"
SYNC="rsync://rsync.europe.gentoo.org/gentoo-portage"
USE="X a52 aac aalib acl acpi aim alsa ansi arts asf audiofile avi
bash-completion bcmath beagle bidi bitmap-fonts bonobo bzip2 bzlib cairo caps
cdb cddb cdparanoia cdr cdrparanoia cli cpdflib cracklib cross crypt cscope css
ctype cups curl curlwrappers dbus dga dio directfb divx4linux dlloader dri dts
dv dvb dvd dvdr dvdread encode escreen esd evo exif fam fbcon ffmpeg fftw
firefox flac foomaticdb fortran ftp gb gcj gd ggi gif gimp gimpprint glitz glut
glx gmp gnome gphoto2 gpm gstreamer gtk gtk2 gtkhtml guile hal howl iconv
imagemagick imlib ipv6 isdnlog jabber jack java jikes jpeg kde kdeenablefinal
kdehiddenvisibility latex lcms ldap lesstif libg++ libnotify logrotate mad mbox
midi mikmod mime ming mmap mmx mmxext mng mono motif mp3 mpeg mpi mplayer
musepack musicbrainz nas ncurses nethack nls nocd nptl nptlonly nsplugin ntfs
nvidia ogg oggvorbis openal opengl opnegl oss pam pcmcia pcre pdf pdflib perl
pic png pnp posix ppds pppd python qt qt3 qt4 quicktime readline real
reflection reiserfs rpm rtc ruby scanner sdl seamonkey session slang slp smp
sndfile sockets socks5 speex spell spl sse sse2 sse3 ssl svg syslog tcltk tcpd
tetex tga theora threads tiff timidity tk truetype truetype-fonts trusted
type1-fonts unicode usb userlocales v4l v4l2 vcd videos vim vorbis wifi
win32codecs wma wmf wmp wxwindows x86 xcomposite xft xine xml xml2 xorg xpm xv
xvid zlib" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci
emu10k1 emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0
intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci"
ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file
hooks iec958 ioplug ladspa lfloat linear meter mulaw multi null plug rate route
share shm softvol" DVB_CARDS="usb-dib0700" ELIBC="glibc"
INPUT_DEVICES="keyboard mouse synaptics" KERNEL="linux" LCD_DEVICES="bayrad
cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LINGUAS="es
en_US" USERLAND="GNU" VIDEO_CARDS="nvidia nv vesa fbdev"
Unset:  CTARGET, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LANG, LDFLAGS,
PORTAGE_RSYNC_EXTRA_OPTS

*** Bug 166823 has been marked as a duplicate of this bug. ***

Fixed in graphviz-2.12

*** Bug 166954 has been marked as a duplicate of this bug. ***

Works for me, asking for CLOSED or FIXED

No, it would be fixed if gd-2.0.34 wasn't stable. But it had to be stabled wrt
security, so now stable tree is broken until a fixed graphviz (that's 2.12
unless somebody fixes 2.8 in some revbump) is stable too (possible skipping the
30 days wait).

*** Bug 167030 has been marked as a duplicate of this bug. ***

I fixed the depend on gd-2.0.33 so that the stable version at least compiles
(though the old gd is likely to get package.masked soon).

Arch teams: Recommend stabilising graphviz-2.12 immediately due to #141577,
it's the current stable release upstream and works for me.

x86 stable

Stop stabilization immediately. It still needs some serious rework·

*** Bug 167064 has been marked as a duplicate of this bug. ***

(In reply to comment #42)
> Stop stabilization immediately. It still needs some serious rework·

x86: You might want to re-evaluate your stable-marking :)

(In reply to comment #44)
> (In reply to comment #42)
> > Stop stabilization immediately. It still needs some serious rework·
> 
> x86: You might want to re-evaluate your stable-marking :)

I rebuilt three times now with differing USE flag combinations (including all
enabled) and it succeeded.  As we have a non-compiling state in 2.8, I choose
non-compiling for some with 2.12.  But thanks for the note.

What exactly is wrong with 2.12? There are no open bugs. It works for me, the
users in #161302, and a couple of users on this bug. And it's obviously better
than having the stable tree broken.

@Chris: There are no open bugs because I just added it a couple of days ago.
And to answer your question about what's wrong: tk USE-flag is wrong (that
option doesn't exist anymore and someone should take a look how to patch
tk-dependendency out), it failed on my machine with guile USE-flag set. gnomeui
is probably needed in DEPEND if pango-support is enabled. Someone should check
whether "dot -c" is still needed in pkg_postinst and if it is, write one line
documentation about the why. And then someone should do some cleanup of the
ebuild (for example the "touch"-line, check the notcl-patch, drop pdf-docs
generation, find a clean-way to  not install the docs).
If you want to replace a broken package with a half-broken one instead of
fixing the stuff above before (or giving me time to fix it), go ahead.

Most (all?) of the possible bugs you mention apply identically to 2.8 and yet
it was stabilised without issue. I'm not suggesting that there's never any room
for enhancement, just that things don't have to be perfect, only better than
the alternatives they replace. Having said that, I looked into the bug list:

tk USE flag is wrong: configure doesn't support --enable-tk. The only bug is
minor; tk users can't opt not to install the graphviz tk stuff by setting -tk
as a local USE flag because configure will detect it anyway.

fails with guile USE flag : compiles, installs ok for me

gnomeui probably needed in DEPEND if pango USE flag set: apparently not.
compiles, installs ok for me

dot-c: dot --help describes why it's there, to "Configure plugins in
$prefix/lib/graphviz/config". 

touch line: possibly not needed if you can guarantee upstream always puts a
more recent modification date on that file than the headers. But given that you
can't guarantee that it does no harm to be certain.

notcl-patch: only inserts 5 lines to build man pages.. could be inlined in
ebuild but whatever.

rm'ing docs: yeah, you could not build them in the first place, it's a minor
enhancement bug.

(In reply to comment #48)
> fails with guile USE flag : compiles, installs ok for me

See #167045

(In reply to comment #48)
> dot-c: dot --help describes why it's there, to "Configure plugins in
> $prefix/lib/graphviz/config". 

If doesn't work at all, and has been broken for ages, maybe someone should
finally remove it... See Bug 130418.

(In reply to comment #6)
> downloading media media-libs/gd to stable version (2.0.33) soved problem for me
> 

I've had this problem on x86_64. I masked media-libs/gd-2.0.34 and downgraded
to media-libs/gd-2.0.33. This allowed graphviz--2.8-r2 to compile. Don't know
how stable things are yet...

another reason to make it stable as soon as possible might be


!!! Multiple versions within a single package slot have been
!!! pulled into the dependency graph:

('ebuild', '/', 'media-libs/gd-2.0.32', 'merge') pulled in by
  ('ebuild', '/', 'media-gfx/graphviz-2.8-r2', 'merge')

('ebuild', '/', 'media-libs/gd-2.0.34', 'merge') pulled in by
  ('ebuild', '/', 'media-libs/libwmf-0.2.8.4', 'nomerge')


Both graphviz and libwmf are of major importance concerning what in turn
depends upon them.

(In reply to comment #52)
> another reason to make it stable as soon as possible might be
> 
> 
> !!! Multiple versions within a single package slot have been
> !!! pulled into the dependency graph:
> 
> ('ebuild', '/', 'media-libs/gd-2.0.32', 'merge') pulled in by
>   ('ebuild', '/', 'media-gfx/graphviz-2.8-r2', 'merge')
> 
> ('ebuild', '/', 'media-libs/gd-2.0.34', 'merge') pulled in by
>   ('ebuild', '/', 'media-libs/libwmf-0.2.8.4', 'nomerge')
> 
> 
> Both graphviz and libwmf are of major importance concerning what in turn
> depends upon them.
> 

Same problem here, I have installed 2.12 for "fixing" this.

if you're going to screw users with circular depends, at least minimize things

RDEPEND="media-libs/gd"
DEPEND="<media-libs/gd-2.0.34"

newer gd causes build failure, not runtime failure

(In reply to comment #54)
> if you're going to screw users with circular depends, at least minimize things
> 
> RDEPEND="media-libs/gd"
> DEPEND="<media-libs/gd-2.0.34"
> 
> newer gd causes build failure, not runtime failure
> 

this seems to be allready in merged to the tree
but isn't this rather a wrong slotted gd?
gd-2.0.34 && gd-2.0.33 && gd-2.0.32 
they all use SLOT="2" as ebuild variable

following worked for me:
changed SLOT in gd-2.0.32.ebuild to 1
changed SLOT in gd-2.0.33.ebuild to 2
changed SLOT in gd-2.0.34.ebuild to 3

graphiz pulled gd-2.0.33 & gd-2.0.34 regarding the R/DEPEND and built
correctly.

(In reply to comment #55)
> but isn't this rather a wrong slotted gd?
> gd-2.0.34 && gd-2.0.33 && gd-2.0.32 
> they all use SLOT="2" as ebuild variable
> 
> following worked for me:
> changed SLOT in gd-2.0.32.ebuild to 1
> changed SLOT in gd-2.0.33.ebuild to 2
> changed SLOT in gd-2.0.34.ebuild to 3

Ouch! Don't do this nor advise doing this to anyone.

(In reply to comment #56)
> 
> Ouch! Don't do this nor advise doing this to anyone.
> 

Ouch. :/

Dear arch-team members. Please test and mark this package stable on your arch
since it fixes a build-bug in the stable-tree.

I removed all the bindings except for tcl. Comments for the reasons are in the
ebuild itself. To sum it up: java/php bindings never build, ruby, python and
probably others are being installed to the wrong directories and
scheme-bindings randomly fail.
We (lu_zero & I) agreed that this is for now the safest approach.

(In reply to comment #58)
> [...] To sum it up: java/php bindings never build, ruby, python and
> probably others are being installed to the wrong directories and
> scheme-bindings randomly fail.

I'd just like to say that java bindings build fine here (~x86) and on my laptop
(~amd64 machine)...

interesting. I get this:
[...]
checking for java... java
checking jni.h usability... no
checking jni.h presence... no
checking for jni.h... no
configure: WARNING: Unable to find header jni.h. The JAVA packages will not be
built
[...]
without patching.

(In reply to comment #60)
> interesting. I get this:
> [...]
> checking for java... java
> checking jni.h usability... no
> checking jni.h presence... no
> checking for jni.h... no
> configure: WARNING: Unable to find header jni.h. The JAVA packages will not be
> built
> [...]
> without patching.
> 

Yes, sorry, you're perfectly right. I get exactly the same output. I
misunderstood what you said about java bindings that never build... I thought
you meant that graphviz doesn't compile with USE="java". Please forget my
comment and forgive my ignorance... ;)

*** Bug 167978 has been marked as a duplicate of this bug. ***

(In reply to comment #54)
> if you're going to screw users with circular depends, at least minimize things
> 
> RDEPEND="media-libs/gd"
> DEPEND="<media-libs/gd-2.0.34"
> 
> newer gd causes build failure, not runtime failure

looks like this is a half baked solution as well because i assumed portage
would sanely handle things ... it doesnt

graphviz-2.8-r2 now tweaks the gd header file on the fly which drops the forced
gd downgrade in both DEPEND and RDEPEND

I just tried 2.8-r2 and got this:

/usr/portage/media-gfx/graphviz/graphviz-2.8-r2.ebuild: line 60: tc-getCPP:
command not found
/usr/portage/media-gfx/graphviz/graphviz-2.8-r2.ebuild: line 60: -P: command
not found

the hack in unpack looks difficult to understand for me, and

grep -r tc-getCPP /usr/portage/media-gfx/graphviz
/usr/portage/media-gfx/graphviz/graphviz-2.8-r2.ebuild: echo '#include
<entities.h>' | $(tc-getCPP) -P -dD > entities.h
sgala@marlow ~ $ grep -r tc-getCPP /usr/portage/eclass
/usr/portage/eclass/toolchain-funcs.eclass:tc-getCPP() { tc-getPROG CPP cpp
"$@"; }

so it looks like toolchain needs to be inherited

I meant toolchain-funcs. Once I solved it, I fell again into:

(...)
make[3]: Leaving directory
`/var/tmp/portage/media-gfx/graphviz-2.8-r2/work/graphviz-2.8/lib/sfio'
Making all in vmalloc
make[3]: Entering directory
`/var/tmp/portage/media-gfx/graphviz-2.8-r2/work/graphviz-2.8/lib/vmalloc'
mkdir -p ../../FEATURE
sh ../../iffe - set cc x86_64-pc-linux-gnu-gcc   : run
../../lib/vmalloc/features/vmalloc > ../../FEATURE/vmalloc
/bin/sh ../../libtool --tag=CC   --mode=compile x86_64-pc-linux-gnu-gcc
-DHAVE_CONFIG_H -I. -I../..  -I../../lib/ast -I../../lib/sfio   -march=nocona
-O2 -pipe -ftree-vectorize -Wno-unknown-pragmas -Wstrict-prototypes
-Wpointer-arith -Wall -ffast-math -c -o malloc.lo malloc.c
mkdir .libs
 x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../.. -I../../lib/ast
-I../../lib/sfio -march=nocona -O2 -pipe -ftree-vectorize -Wno-unknown-pragmas
-Wstrict-prototypes -Wpointer-arith -Wall -ffast-math -c malloc.c  -fPIC -DPIC
-o .libs/malloc.o
malloc.c:408: error: return type is an incomplete type
malloc.c: In function 'mstats':
malloc.c:410: error: storage size of 'ms' isn't known
malloc.c:421: warning: 'return' with a value, in function returning void
malloc.c:410: warning: unused variable 'ms'
make[3]: *** [malloc.lo] Error 1
make[3]: Leaving directory
`/var/tmp/portage/media-gfx/graphviz-2.8-r2/work/graphviz-2.8/lib/vmalloc'
make[2]: *** [all-recursive] Error 1
make[2]: Leaving directory
`/var/tmp/portage/media-gfx/graphviz-2.8-r2/work/graphviz-2.8/lib'
make[1]: *** [all-recursive] Error 1
make[1]: Leaving directory
`/var/tmp/portage/media-gfx/graphviz-2.8-r2/work/graphviz-2.8'
make: *** [all] Error 2

!!! ERROR: media-gfx/graphviz-2.8-r2 failed.
Call stack:
  ebuild.sh, line 1614:   Called dyn_compile
  ebuild.sh, line 971:   Called qa_call 'src_compile'
  environment, line 3539:   Called src_compile
  graphviz-2.8-r2.ebuild, line 84:   Called die

!!! Compile Failed!
!!! If you need support, post the topmost build error, and the call stack if
relevant.
!!! A complete build log is located at
'/var/tmp/portage/media-gfx/graphviz-2.8-r2/temp/build.log'.

am I the only one seeing this? the only one with amd64/glibc-25 or gcc-4.1.2
around? Not sure why this error it there, in fact it looks like the test for
mstats is completely broken.

Please, try with media-gfx/graphviz-2.12

Good luck!

exactly the same error:

make[3]: Leaving directory
`/var/tmp/portage/media-gfx/graphviz-2.12/work/graphviz-2.12/lib/sfio'
Making all in vmalloc
make[3]: Entering directory
`/var/tmp/portage/media-gfx/graphviz-2.12/work/graphviz-2.12/lib/vmalloc'
mkdir -p ../../FEATURE
../../iffe - set cc x86_64-pc-linux-gnu-gcc   : run
../../lib/vmalloc/features/vmalloc > ../../FEATURE/vmalloc
/bin/sh ../../libtool --tag=CC   --mode=compile x86_64-pc-linux-gnu-gcc
-DHAVE_CONFIG_H -I. -I../..  -I../../lib/ast -I../../lib/sfio   -march=nocona
-O2 -pipe -ftree-vectorize -Wno-unknown-pragmas -Wstrict-prototypes
-Wpointer-arith -Wall -ffast-math -MT malloc.lo -MD -MP -MF .deps/malloc.Tpo -c
-o malloc.lo malloc.c
mkdir .libs
 x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../.. -I../../lib/ast
-I../../lib/sfio -march=nocona -O2 -pipe -ftree-vectorize -Wno-unknown-pragmas
-Wstrict-prototypes -Wpointer-arith -Wall -ffast-math -MT malloc.lo -MD -MP -MF
.deps/malloc.Tpo -c malloc.c  -fPIC -DPIC -o .libs/malloc.o
malloc.c:408: error: return type is an incomplete type
malloc.c: In function 'mstats':
malloc.c:410: error: storage size of 'ms' isn't known
malloc.c:421: warning: 'return' with a value, in function returning void
malloc.c:410: warning: unused variable 'ms'
make[3]: *** [malloc.lo] Error 1
make[3]: Leaving directory
`/var/tmp/portage/media-gfx/graphviz-2.12/work/graphviz-2.12/lib/vmalloc'
make[2]: *** [all-recursive] Error 1
make[2]: Leaving directory
`/var/tmp/portage/media-gfx/graphviz-2.12/work/graphviz-2.12/lib'
make[1]: *** [all-recursive] Error 1
make[1]: Leaving directory
`/var/tmp/portage/media-gfx/graphviz-2.12/work/graphviz-2.12'
make: *** [all] Error 2

!!! ERROR: media-gfx/graphviz-2.12 failed.
Call stack:
  ebuild.sh, line 1614:   Called dyn_compile
  ebuild.sh, line 971:   Called qa_call 'src_compile'
  environment, line 3666:   Called src_compile
  graphviz-2.12.ebuild, line 157:   Called die

!!! emake failed
!!! If you need support, post the topmost build error, and the call stack if
relevant.
!!! A complete build log is located at
'/var/tmp/portage/media-gfx/graphviz-2.12/temp/build.log'.

Due to some strange reason, graphviz here is trying to compile this mstats
thing, which looks either archaic or not linux related at all. I have 2.8-r2
compiled here, so it started failing recently, due to portage, toolchain or
auto* changes.

How can I help debugging it?

if I edit <workdir>/FEATURES/vmalloc, and change 

#define _lib_mstats     0       /* mstats() in default lib(s) */


(it was a 1), a new compile gives a different error:

/bin/sh ../../libtool --tag=CC   --mode=link x86_64-pc-linux-gnu-gcc 
-march=nocona -O2 -pipe -ftree-vectorize -Wno-unknown-pragmas
-Wstrict-prototypes -Wpointer-arith -Wall -ffast-math   -o gvpr actions.o
compile.o gvpr.o gprstate.o parse.o queue.o ../../lib/vmalloc/libvmalloc_C.la
../../lib/sfio/libsfio_C.la ../../lib/ingraphs/libingraphs_C.la
../../lib/expr/libexpr.la ../../lib/agraph/libagraph.la -lm 
x86_64-pc-linux-gnu-gcc -march=nocona -O2 -pipe -ftree-vectorize
-Wno-unknown-pragmas -Wstrict-prototypes -Wpointer-arith -Wall -ffast-math -o
.libs/gvpr actions.o compile.o gvpr.o gprstate.o parse.o queue.o 
../../lib/vmalloc/.libs/libvmalloc_C.a ../../lib/sfio/.libs/libsfio_C.a
../../lib/ingraphs/.libs/libingraphs_C.a ../../lib/expr/.libs/libexpr.so
../../lib/agraph/.libs/libagraph.so
/var/tmp/portage/media-gfx/graphviz-2.12/work/graphviz-2.12/lib/cdt/.libs/libcdt.so
-lm
../../lib/expr/.libs/libexpr.so: undefined reference to `qldexp'
../../lib/expr/.libs/libexpr.so: undefined reference to `qfrexp'
collect2: ld returned 1 exit status
make[3]: *** [gvpr] Error 1
make[3]: se sale del directorio
`/var/tmp/portage/media-gfx/graphviz-2.12/work/graphviz-2.12/cmd/gvpr'
make[2]: *** [all-recursive] Error 1
make[2]: se sale del directorio
`/var/tmp/portage/media-gfx/graphviz-2.12/work/graphviz-2.12/cmd'
make[1]: *** [all-recursive] Error 1
make[1]: se sale del directorio
`/var/tmp/portage/media-gfx/graphviz-2.12/work/graphviz-2.12'
make: *** [all] Error 2

!!! ERROR: media-gfx/graphviz-2.12 failed.
Call stack:
  ebuild.sh, line 1614:   Called dyn_compile
  ebuild.sh, line 971:   Called qa_call 'src_compile'
  environment, line 3682:   Called src_compile
  graphviz-2.12.ebuild, line 157:   Called die

!!! emake failed
!!! If you need support, post the topmost build error, and the call stack if
relevant.
!!! A complete build log is located at
'/var/tmp/portage/media-gfx/graphviz-2.12/temp/build.log'.

blah, copy & pasting from testing ebuild to cvs ebuild lost the toolchain-funcs
inherit ... fixed in cvs

Stable for HPPA.

ppc64 stable

sparc stable.

Stable on ppc

amd64 stable

arm/ia64/s390 done

alpha stable.

All done, closing per dev-zero's request :)