Bugzilla Bug 159169

pena image # find usr/ -name "*.jar" -type f
usr/share/tomcat-5.5/bin/bootstrap.jar
usr/share/tomcat-5.5/bin/tomcat-juli.jar
usr/share/tomcat-5.5/lib/catalina-ant.jar
usr/share/tomcat-5.5/lib/tomcat-coyote.jar
usr/share/tomcat-5.5/lib/catalina-optional.jar
usr/share/tomcat-5.5/lib/tomcat-util.jar
usr/share/tomcat-5.5/lib/jasper-compiler.jar
usr/share/tomcat-5.5/lib/catalina-storeconfig.jar
usr/share/tomcat-5.5/lib/naming-factory.jar
usr/share/tomcat-5.5/lib/tomcat-http.jar
usr/share/tomcat-5.5/lib/catalina-ant-jmx.jar
usr/share/tomcat-5.5/lib/jasper-runtime.jar
usr/share/tomcat-5.5/lib/servlets-invoker.jar
usr/share/tomcat-5.5/lib/catalina.jar
usr/share/tomcat-5.5/lib/naming-resources.jar
usr/share/tomcat-5.5/lib/catalina-cluster.jar
usr/share/tomcat-5.5/lib/servlets-default.jar
usr/share/tomcat-5.5/lib/tomcat-ajp.jar
usr/share/tomcat-5.5/lib/tomcat-apr.jar
usr/share/tomcat-5.5/lib/servlets-webdav.jar
usr/share/tomcat-5.5/lib/tomcat-jkstatus-ant.jar
usr/share/tomcat-5.5/common/i18n/tomcat-i18n-en.jar
usr/share/tomcat-5.5/common/i18n/tomcat-i18n-es.jar
usr/share/tomcat-5.5/common/i18n/tomcat-i18n-fr.jar
usr/share/tomcat-5.5/common/i18n/tomcat-i18n-ja.jar
usr/share/tomcat-5.5/server/webapps/manager/WEB-INF/lib/commons-fileupload.jar
usr/share/tomcat-5.5/server/webapps/manager/WEB-INF/lib/commons-io.jar
usr/share/tomcat-5.5/server/webapps/manager/WEB-INF/lib/catalina-manager.jar
usr/share/tomcat-5.5/server/webapps/host-manager/WEB-INF/lib/catalina-host-manager.jar
pena image # file
usr/share/tomcat-5.5/server/webapps/manager/WEB-INF/lib/commons-fileupload.jar

Indexing:
/var/tmp/portage/www-servers/tomcat-5.5.20-r5/image/usr/share/tomcat-5.5/server/webapps/manager/WEB-INF/lib/commons-fileupload.jar
Tried to add a class file that already exists in the database:
        commons-fileupload-0:
org.apache.commons.fileupload.DefaultFileItem.class
        commons-fileupload-0:
org.apache.commons.fileupload.DefaultFileItemFactory.class
        commons-fileupload-0:
org.apache.commons.fileupload.DiskFileUpload.class
        commons-fileupload-0: org.apache.commons.fileupload.FileItem.class
        commons-fileupload-0:
org.apache.commons.fileupload.FileItemFactory.class
        commons-fileupload-0: org.apache.commons.fileupload.FileUpload.class
        commons-fileupload-0:
org.apache.commons.fileupload.FileUploadBase$InvalidContentTypeException.class
        commons-fileupload-0:
org.apache.commons.fileupload.FileUploadBase$SizeLimitExceededException.class
        commons-fileupload-0:
org.apache.commons.fileupload.FileUploadBase$UnknownSizeException.class
        commons-fileupload-0:
org.apache.commons.fileupload.FileUploadBase.class
        commons-fileupload-0:
org.apache.commons.fileupload.FileUploadException.class
        commons-fileupload-0:
org.apache.commons.fileupload.MultipartStream$IllegalBoundaryException.class
        commons-fileupload-0:
org.apache.commons.fileupload.MultipartStream$MalformedStreamException.class
        commons-fileupload-0:
org.apache.commons.fileupload.MultipartStream.class
        commons-fileupload-0:
org.apache.commons.fileupload.ParameterParser.class
        commons-fileupload-0:
org.apache.commons.fileupload.RequestContext.class
        commons-fileupload-0:
org.apache.commons.fileupload.disk.DiskFileItem.class
        commons-fileupload-0:
org.apache.commons.fileupload.disk.DiskFileItemFactory.class
        commons-fileupload-0:
org.apache.commons.fileupload.portlet.PortletFileUpload.class
        commons-fileupload-0:
org.apache.commons.fileupload.portlet.PortletRequestContext.class
        commons-fileupload-0:
org.apache.commons.fileupload.servlet.ServletFileUpload.class
        commons-fileupload-0:
org.apache.commons.fileupload.servlet.ServletRequestContext.class

!!! ERROR: www-servers/tomcat-5.5.20-r5 failed.
Call stack:
  ebuild.sh, line 1596:   Called dyn_preinst
  ebuild.sh, line 1050:   Called post_pkg_preinst
  bashrc, line 10:   Called die

!!! /home/betelgeuse/jarindex/jarindexer.py failed
!!! If you need support, post the topmost build error, and the call stack if
relevant.

I added -H to cp command to preserve the symlinks and changed when they were
linked in. Fix committed to tree, so closing this bug since it's resolved now
:)