Bugzilla Bug 154545

Hi, after installing mafft (sci-biology/mafft) it cannot run since
$MAFFT_BINARIES is not set.

$ mafft

correctly installed?
mafft binaries have to be installed in $MAFFT_BINARIES
or the /usr/local/lib/mafft directory.

As a workaroud I added

export MAFFT_BINARIES=/usr/bin

in my /etc/profile, nevertheless should be corrected the ebuild to add the
proper environmental variable.

# emerge --info
Portage 2.1.2_pre3-r5 (default-linux/x86/no-nptl, gcc-4.1.1, glibc-2.5-r0,
2.6.18-gentoo-r1smp i686)
=================================================================
System uname: 2.6.18-gentoo-r1smp i686 Intel(R) Xeon(TM) CPU 3.06GHz
Gentoo Base System version 1.12.5
Last Sync: Sat, 21 Oct 2006 13:20:01 +0000
app-admin/eselect-compiler: [Not Present]
dev-java/java-config: 1.3.7, 2.0.30
dev-lang/python:     2.4.3-r4
dev-python/pycrypto: 2.0.1-r5
dev-util/ccache:     [Not Present]
dev-util/confcache:  [Not Present]
sys-apps/sandbox:    1.2.18.1
sys-devel/autoconf:  2.60
sys-devel/automake:  1.6.3, 1.7.9-r1, 1.9.6-r2, 1.10
sys-devel/binutils:  2.17
sys-devel/gcc-config: 1.3.13-r4
sys-devel/libtool:   1.5.22
virtual/os-headers:  2.6.17-r1
ACCEPT_KEYWORDS="x86 ~x86"
AUTOCLEAN="yes"
CBUILD="i686-pc-linux-gnu"
CFLAGS="-march=pentium4 -O2 -fomit-frame-pointer -pipe"
CHOST="i686-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/share/X11/xkb"
CONFIG_PROTECT_MASK="/etc/env.d /etc/env.d/java/ /etc/gconf
/etc/java-config/vms/ /etc/terminfo /etc/texmf/web2c"
CXXFLAGS="-march=pentium4 -O2 -fomit-frame-pointer -pipe"
DISTDIR="/usr/portage/distfiles"
FEATURES="autoconfig distlocks metadata-transfer sandbox sfperms strict"
GENTOO_MIRRORS="http://mirror.switch.ch/ftp/mirror/gentoo
http://distfiles.gentoo.org
http://www.ibiblio.org/pub/Linux/distributions/gentoo"
MAKEOPTS="-j3"
PKGDIR="/usr/portage/packages"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress
--force --whole-file --delete --delete-after --stats --timeout=180
--exclude=/distfiles --exclude=/local --exclude=/packages"
PORTAGE_TMPDIR="/var/tmp"
PORTDIR="/usr/portage"
PORTDIR_OVERLAY="/usr/local/portage"
SYNC="rsync://rsync.europe.gentoo.org/gentoo-portage"
USE="x86 X apm arts berkdb bitmap-fonts cli cracklib crypt cups dlloader dri
eds elibc_glibc emboss encode foomaticdb fortran gdbm gif gpm gstreamer gtk
gtk2 imlib input_devices_evdev input_devices_keyboard input_devices_mouse ipv6
isdnlog jpeg kde kernel_linux ldap libg++ libwww mad mikmod motif mp3 mpeg
mysql ncurses nls ogg opengl oss pam pcre perl png pppd python qt3 qt4
quicktime readline reflection session spell spl ssl tcpd threads truetype
truetype-fonts type1-fonts userland_GNU video_cards_apm video_cards_ark
video_cards_ati video_cards_chips video_cards_cirrus video_cards_cyrix
video_cards_dummy video_cards_fbdev video_cards_glint video_cards_i128
video_cards_i740 video_cards_i810 video_cards_imstt video_cards_mga
video_cards_neomagic video_cards_nsc video_cards_nv video_cards_rendition
video_cards_s3 video_cards_s3virge video_cards_savage video_cards_siliconmotion
video_cards_sis video_cards_sisusb video_cards_tdfx video_cards_tga
video_cards_trident video_cards_tseng video_cards_v4l video_cards_vesa
video_cards_vga video_cards_via video_cards_vmware video_cards_voodoo vorbis
xml xmms xorg xv zlib"
Unset:  CTARGET, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LANG, LC_ALL, LDFLAGS,
LINGUAS, PORTAGE_RSYNC_EXTRA_OPTS

Fixed in -r1, thanks!