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Some recent versions added /etc/portage/bin/post-sync to run commands after syncing the tree. emerge-delta-webrsync should make use of this too.
Created an attachment (id=99680) [details] post_sync.patch add hook for /etc/portage/bin/post_sync and change to "emerge --metadata"
Created an attachment (id=99681) [details] post_sync.patch without --metadata change
Created an attachment (id=99682) [details] post_sync.patch moving post_sync after "emerge --metadata" like Betelgeuse suggested. sorry for the bugspam.
Committed a patch in 3.5.1-r2.