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Bug#: 151054
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Status: RESOLVED
Resolution: FIXED
Assigned To: Gentoo Science Mathematics related packages <sci-mathematics@gentoo.org>
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Reporter: Evil Compile Person <bugs@dev.gentooexperimental.org>
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Bug 151054 depends on: Show dependency tree
Bug 151054 blocks:
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Additional Comments: (this is where you put emerge --info)


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Description:   Opened: 2006-10-12 11:35 0000
The build process spews many warnings, but fatal is this (running in 32bit
chroot on amd64) as it misdetects 64bit and also shows some bad error handling:


In file included from
/usr/lib/gcc/i686-pc-linux-gnu/4.1.1/include/g++-v4/backward/iostream.h:31,
                 from globals.h:17,
                 from testdata.h:8,
                 from gen_test.cc:9:
/usr/lib/gcc/i686-pc-linux-gnu/4.1.1/include/g++-v4/backward/backward_warning.h:32:2:
warning: #warning This file includes at least one deprecated or antiquated
header. Please consider using one of the 32 headers found in section 17.4.1.2
of the C++ standard. Examples include substituting the <X> header for the <X.h>
header for C++ includes, or <iostream> instead of the deprecated header
<iostream.h>. To disable this warning use -Wno-deprecated.
c++  term_ordering.o binomial.o list.o BigInt.o LLL.o matrix.o ideal.o
Buchberger.o ideal_stuff.o IP_algorithms.o testdata.o gen_test.o -o gen_test
-L/var/tmp/portage/singular-3.0.1.2/work/Singular-3-0-1/x86_64-Linux/lib
-L/var/tmp/portage/singular-3.0.1.2/work/Singular-3-0-1/x86_64-Linux/lib  -lgmp
c++ -I .
-I/var/tmp/portage/singular-3.0.1.2/work/Singular-3-0-1/x86_64-Linux/include 
-O2 -march=i686 -pipe -c LLL_lattice_to_send.cc -o LLL_lattice_to_send.o
c++  LLL_lattice_to_send.o -o LLL
-L/var/tmp/portage/singular-3.0.1.2/work/Singular-3-0-1/x86_64-Linux/lib
-L/var/tmp/portage/singular-3.0.1.2/work/Singular-3-0-1/x86_64-Linux/lib  -lgmp
../mkinstalldirs
/var/tmp/portage/singular-3.0.1.2/work/Singular-3-0-1/x86_64-Linux
/bin/install -c  -s solve_IP
/var/tmp/portage/singular-3.0.1.2/work/Singular-3-0-1/x86_64-Linux
/bin/install -c  -s change_cost
/var/tmp/portage/singular-3.0.1.2/work/Singular-3-0-1/x86_64-Linux
/bin/install -c  -s toric_ideal
/var/tmp/portage/singular-3.0.1.2/work/Singular-3-0-1/x86_64-Linux
/bin/install -c  -s gen_test
/var/tmp/portage/singular-3.0.1.2/work/Singular-3-0-1/x86_64-Linux
/bin/install -c  -s LLL
/var/tmp/portage/singular-3.0.1.2/work/Singular-3-0-1/x86_64-Linux
make[2]: Leaving directory
`/var/tmp/portage/singular-3.0.1.2/work/Singular-3-0-1/IntegerProgramming'
echo "* do not forget to install Singular-3-0-1-share.tar.gz"
* do not forget to install Singular-3-0-1-share.tar.gz
make[1]: Leaving directory
`/var/tmp/portage/singular-3.0.1.2/work/Singular-3-0-1'
>>> Source compiled.
>>> Test phase [not enabled]: sci-mathematics/singular-3.0.1.2

>>> Install singular-3.0.1.2 into /var/tmp/portage/singular-3.0.1.2/image/ category sci-mathematics
/usr/portage/sci-mathematics/singular/singular-3.0.1.2.ebuild: line 75: cd:
/var/tmp/portage/singular-3.0.1.2/work/Singular-3-0-1/ix86-Linux: No such file
or directory
rm: cannot remove `Singular': No such file or directory

!!! ERROR: sci-mathematics/singular-3.0.1.2 failed.

Gentoo Base System version 1.12.5
*** Deprecated use of action 'info', use '--info' instead
Portage 2.1.2_pre2-r7 (default-linux/x86/2006.1, gcc-4.1.1, glibc-2.4-r3,
2.6.16.16 x86_64)
=================================================================
System uname: 2.6.16.16 x86_64 AMD Athlon(tm) 64 Processor 3200+
Last Sync: Tue, 10 Oct 2006 17:50:02 +0000
ccache version 2.3 [enabled]
app-admin/eselect-compiler: [Not Present]
dev-java/java-config: [Not Present]
dev-lang/python:     2.4.3-r4
dev-python/pycrypto: 2.0.1-r5
dev-util/ccache:     2.3
dev-util/confcache:  [Not Present]
sys-apps/sandbox:    1.2.17
sys-devel/autoconf:  2.13, 2.59-r7
sys-devel/automake:  1.9.6-r2
sys-devel/binutils:  2.16.1-r3
sys-devel/gcc-config: 1.3.13-r4
sys-devel/libtool:   1.5.22
virtual/os-headers:  2.6.17-r1
ACCEPT_KEYWORDS="x86"
AUTOCLEAN="yes"
CBUILD="i686-pc-linux-gnu"
CFLAGS="-O2 -march=i686 -pipe"
CHOST="i686-pc-linux-gnu"
CONFIG_PROTECT="/etc"
CONFIG_PROTECT_MASK="/etc/env.d /etc/gconf /etc/revdep-rebuild /etc/terminfo"
CXXFLAGS="-O2 -march=i686 -pipe"
DISTDIR="/usr/portage/distfiles"
FEATURES="autoconfig buildpkg ccache distlocks metadata-transfer sandbox
sfperms strict"
GENTOO_MIRRORS="http://85.25.128.62
ftp://212.219.56.134/sites/www.ibiblio.org/gentoo/
ftp://ftp.snt.utwente.nl/pub/os/linux/gentoo"
PKGDIR="/usr/portage/packages"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress
--force --whole-file --delete --delete-after --stats --timeout=180
--exclude=/distfiles --exclude=/local --exclude=/packages"
PORTAGE_TMPDIR="/var/tmp"
PORTDIR="/usr/portage"
PORTDIR_OVERLAY="/usr/local/portage"
SYNC="rsync://rsync12.de.gentoo.org/gentoo-portage"
USE="x86 X berkdb bitmap-fonts cli crypt cups dlloader dri elibc_glibc fortran
gdbm gpm input_devices_evdev input_devices_keyboard input_devices_mouse ipv6
isdnlog kernel_linux libg++ ncurses nls nptl nptlonly pam pcre perl ppds pppd
python readline reflection session spl ssl tcpd truetype-fonts type1-fonts udev
unicode userland_GNU video_cards_apm video_cards_ark video_cards_ati
video_cards_chips video_cards_cirrus video_cards_cyrix video_cards_dummy
video_cards_fbdev video_cards_glint video_cards_i128 video_cards_i740
video_cards_i810 video_cards_imstt video_cards_mga video_cards_neomagic
video_cards_nsc video_cards_nv video_cards_rendition video_cards_s3
video_cards_s3virge video_cards_savage video_cards_siliconmotion
video_cards_sis video_cards_sisusb video_cards_tdfx video_cards_tga
video_cards_trident video_cards_tseng video_cards_v4l video_cards_vesa
video_cards_vga video_cards_via video_cards_vmware video_cards_voodoo xorg
zlib"
Unset:  CTARGET, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LANG, LC_ALL, LDFLAGS,
LINGUAS, MAKEOPTS, PORTAGE_RSYNC_EXTRA_OPTS

------- Comment #1 From Markus Dittrich 2006-10-13 05:21:38 0000 -------
Thanks for pointing this out. I will probably bump singular
to the latest release over the next couple of days and will
try to take care of this issue in the process.

Thanks,
Markus

------- Comment #2 From Markus Dittrich 2006-10-13 12:55:45 0000 -------
I've just committed a new version (3.0.2.1) to portage which
should fix your problems I think. Please give it a try once it hits
the mirrors and report back.

Thanks,
Markus

------- Comment #3 From Evil Compile Person 2006-10-20 08:16:21 0000 -------
>>> sci-mathematics/singular-3.0.1.2 merged.

compiles and installs, closing bug.

Thanks for the fast fix!

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