A Genomic Mapping and Alignment Program for mRNA and EST Sequences http://www.gene.com/share/gmap/ This is a very simple ebuild, however the package license is custom afaik.
Created attachment 88063 [details] gmap-20060421.ebuild
This package should be put in sci-biology. The license for this package is: Copyright (c) 2005 Genentech, Inc. All rights reserved. The Developers of this software are Thomas D. Wu <twu@gene.com> and Colin K. Watanabe <ckw@gene.com>. Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Package"), to use, copy, and distribute copies of the Package, without modifications, provided that the above copyright notice and this permission notice are included in all copies or substantial portions of the Package. Distribution of this Package as part of a commercial software product requires prior arrangement with the Developers. Permission is also hereby granted, free of charge, to any person obtaining a copy of this Package, to modify your copy or copies of the Package or any portion of it, provided that you use the modified Package only within your corporation or organization. Distribution of a modified version of this Package requires prior arrangement with the Developers. Genome databases, map files, and other result files produced as output from software in this Package do not automatically fall under the copyright of this Package, but belong to whoever generated them, and may be distributed freely. IN NO EVENT SHALL GENENTECH, INC. BE LIABLE TO ANY PARTY FOR DIRECT, INDIRECT, SPECIAL, INCIDENTAL, OR CONSEQUENTIAL DAMAGES, OR OTHER LIABILITY, INCLUDING LOST PROFITS, ARISING FROM THE USE OF THIS SOFTWARE. THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE. GENENTECH, INC. HAS NO OBLIGATION TO PROVIDE MAINTENANCE, SUPPORT, UPDATES, ENHANCEMENTS, OR MODIFICATIONS.
Created attachment 88207 [details] die on make failure
The latest version can be found at http://www.gentoo-sunrise.org/sunrise/browser/reviewed/sci-biology/gmap
I'm already in sci-bio.
I already watch this bug through the sci-biology alias.
Hi Andrey. Sorry for the delay. I'll try to go through some of your ebuilds finally. This one is pretty basic, still there are a few things you should cleanup, even though they are stylistical (I guess this is one of the early ones? I saw some of the recent in overlays and those were quite cleaner). 1. The ebuild is missing headers required for proper processing in cvs, please add those (Copyright, License and Header lines). In general, please use template, such as skel.ebuild for example, as a basis of new ebuilds. Even just using "vim pkg-ver.ebuild" when creating a new file will pull in a relevant template. 2. RESTRICT="nomirror" should be RESTRICT="mirror" 3. MY_P="`expr substr ${PV} 1 4`-`expr substr ${PV} 5 2`-`expr substr ${PV} 7 2`" Two issues actually: 3.1: please use $(action) form instead of backquotes 3.2: It would be better to use versionator.eclass here 4. Is there really nothing else to install? At the very least "dodoc AUTHORS Changelog ..." for the common files should be added (no need to have INSTALL there, but should contain COPYING) Oh, and the latest version out is 2007-09-28 at the moment, so please update ebuild with these remarks to that version ;). George
George, As I mention in the comments, the latest version can be found at http://www.gentoo-sunrise.org/sunrise/browser/reviewed/sci-biology/gmap I update that regularly (it's currently at the latest version) and it corrects all the issues you list. As far as I can tell there's nothing else to dodoc, no.
For tracking purposes adding recruitment bug as a dependency. Not the other way around, as we'll do commits together when you get access, so it will be closed after recruitment.
sorry, that link has now become http://overlays.gentoo.org/proj/sunrise/browser/sunrise/sci-biology/gmap
Ah, yes, sorry, I already added sunrise to overlays, but after going through this one. The version in the overlay looks quite allright :). I'll go through a few more of your ebuilds and then pester recruiters on the recruitment bug.. George
InCVS
Please allow also for ~amd64, it compiles fine for me hre.
Keyworded, thanks
