Bug 119598 – doxygen-1.4.6 doesn't build doxywizard when USE=qt (flex problem)

• Status: RESOLVED FIXED
• Product: Gentoo Linux

[Description Michael Cramer 2006-01-19 13:48:03 UTC]

i got this with latest flex (flex 2.5.31) in portage

/usr/bin/gmake -f Makefile.doxywizard QTDIR=/usr/qt/3 all
gmake[1]: Entering directory `/var/tmp/portage/doxygen-1.4.6/work/doxygen-1.4.6/addon/doxywizard'
g++ -c -pipe -Wall -W -fno-exceptions -march=pentium3 -pipe -Os -fomit-frame-pointer -DNO_DEBUG -I../../src -I/usr/qt/3/include -o obj/config.o config.cpp
<stdout>: In function 'void configYY_init_buffer(yy_buffer_state*, FILE*)':
<stdout>:2064: error: 'isatty' was not declared in this scope

with flex-2.5.4a doxygen builds correctly



bigmichi1 doxywizard # emerge -pv app-doc/doxygen

These are the packages that I would merge, in order:

Calculating dependencies ...done!
[ebuild     U ] app-doc/doxygen-1.4.6 [1.4.5] USE="doc qt tetex unicode" 0 kB

Total size of downloads: 0 kB


bigmichi1 doxywizard # emerge info
Portage 2.1_pre3-r1 (default-linux/x86/2005.1, gcc-4.0.2, glibc-2.3.6-r2, 2.6.15-gentoo-r1-2005.1 i686)
=================================================================
System uname: 2.6.15-gentoo-r1-2005.1 i686 Pentium III (Coppermine)
Gentoo Base System version 1.12.0_pre14
dev-lang/python:     2.4.2
sys-apps/sandbox:    1.2.17
sys-devel/autoconf:  2.13, 2.59-r7
sys-devel/automake:  1.4_p6, 1.5, 1.6.3, 1.7.9-r1, 1.8.5-r3, 1.9.6-r1
sys-devel/binutils:  2.16.1-r1
sys-devel/libtool:   1.5.22
virtual/os-headers:  2.6.11-r3
ACCEPT_KEYWORDS="x86 ~x86"
AUTOCLEAN="yes"
CBUILD="i686-pc-linux-gnu"
CFLAGS="-march=pentium3 -pipe -Os -fomit-frame-pointer"
CHOST="i686-pc-linux-gnu"
CONFIG_PROTECT="/etc /opt/openjms/config /usr/kde/2/share/config /usr/kde/3.5/env /usr/kde/3.5/share/config /usr/kde/3.5/shutdown /usr/kde/3/share/config /usr/lib/fax /usr/lib/mozilla/defaults/pref /usr/share/X11/xkb /usr/share/config /var/qmail/control /var/spool/fax/etc"
CONFIG_PROTECT_MASK="/etc/gconf /etc/terminfo /etc/texmf/web2c /etc/env.d"
CXXFLAGS="-march=pentium3 -pipe -Os -fomit-frame-pointer"
DISTDIR="/usr/portage/distfiles"
FEATURES="autoconfig distlocks sandbox sfperms strict"
GENTOO_MIRRORS="http://distfiles.gentoo.org http://distro.ibiblio.org/pub/linux/distributions/gentoo"
LANG="C"
LC_ALL="C"
LDFLAGS="-Wl,-O1 -Wl,--sort-common"
LINGUAS="de"
MAKEOPTS="-j3"
PKGDIR="/usr/portage/packages"
PORTAGE_TMPDIR="/var/tmp"
PORTDIR="/usr/portage"
PORTDIR_OVERLAY="/usr/local/portage"
SYNC="rsync://rsync.gentoo.org/gentoo-portage"
USE="x86 7zip X Xaw3d a52 aac aalib acl acpi alsa amuled apache2 apm ares arts artswrappersuid artworkextra asterisk async audiofile authfile automount avalon avi bash-completion bcmath berkdb big-tables bitmap-fonts bootsplash boundschecking brltty bzip2 cairo calendar calender canvas caps cdb cdr cjk clamav cli crypt ctype cups curl curlwrappers dba dbus dga directfb djbfft doc dri dts dvd dvdr dvi dynagraph eds elf emacs emboss encode erandom esd examples exif expat extraengine fam fbcon ffmpeg flac flatfile fontconfig foomaticdb fortran fpx freetds freetts ftp gcj gd gdbm ggi gif glep glibc-omitfp glitz glut gmp gnome gnutls gpm graphviz gs gstreamer gtk gtk2 gtkhtml guile hal hesiod howl iconv id3 idled idn imagemagick imap imlib immqt inifile ipv6 ithreads jack jack-tmpfs java java-external javamail javascript jbig jce jikes jms jmx jpeg junit justify jython kde kdeenablefinal kerberos kqemu krb4 lame lcms ldap ldapsam leim libcaca libclamav libg++ libwww linuxthreads-tls lm_sensors logrotate mad max-idx-128 mbrola memlimit mgetty mhash mikmod ming mmap mmx mng mono motif mozcalendar mozdevelop mozilla mp3 mp4live mpeg mpeg2 mpm-prefork mssql mudflap mysql mysqli nas nautilus ncurses neXt netpbm network nfs nis nls nntp nptl nptlonly nsplugin numeric oav objc objc-gc odbc ogg oggvorbis on-the-fly-crypt opengl oss pam pam_chroot pam_console pam_timestamp pcntl pcre pda pdflib pdo pear perl perlsuid pg-hier pg-intdatetime php physfs pic player png portaudio posix postgres ppds pwdb python qt quicktime quotas readline real remote rewrite rhino rle rpm ruby samba sample sasl script sdl sendfile sensord session shaper sharedmem silc simplexml sitemisc skey slang slp smp smux sndfile snmp soap sockets socks5 softquota source speex spell spf spl sqlite srp sse ssl stats svg svga swat symlink sysfs syslog sysvipc t1lib tcltk tcpd tetex theora threads tidy tiff tokenizer toolbar tools truetype truetype-fonts type1-fonts ucs2 udev unicode urandom usb utf8 v4l v4l2 vda vorbis vv wddx win32codecs winbind wmf x264 xinerama xinetd xml xml2 xmlreader xmlrpc xpm xprint xsl xv xvid yaz zip zlib elibc_glibc kernel_linux linguas_de userland_GNU video_cards_ati128"

fails also with gcc-3.4.5

[Comment 1 Steve Arnold 2006-01-24 21:16:39 UTC]

I can mask/avoid versions above flex-2.5.4a in the ebuild, but shouldn't this be addressed upstream by the flex maintainers?  Perhaps the base-system folks can apply a patch (unless it's really an error in the doxygen code).  Any takers?

[Comment 2 SpanKY 2006-02-03 16:43:37 UTC]

well, it works for me heh with flex-2.5.31

are you able to reproduce Steve ?

[Comment 3 jaBo 2006-02-05 05:36:00 UTC]

(In reply to comment #2)
> well, it works for me heh with flex-2.5.31
> 
> are you able to reproduce Steve ?
> 

flex-2.5.31 didnt work for me and I had to add it in package.mask. The other version (it is stable) flex-2.5.4a-r6 was the solution that worked fine and  later when emerging doxygen everthing went well.
so for me:
flex-2.5.31 is NOT OK
flex-2.5.4a-r6 is OK
bye

[Comment 4 Chris Torske 2006-02-05 06:26:09 UTC]

I too am getting this bug also.  Originaly I thought that it was working fine for me; till I decided to remove doxygen and install it over again.

Portage 2.1_pre4-r1 (default-linux/amd64/2006.0, gcc-3.4.5, glibc-2.3.6-r2, 2.6.15-gentoo-r2 x86_64)
=================================================================
System uname: 2.6.15-gentoo-r2 x86_64 AMD Athlon(tm) 64 Processor 3200+
Gentoo Base System version 1.12.0_pre15
dev-lang/python:     2.3.5-r2, 2.4.2-r1
sys-apps/sandbox:    1.2.17
sys-devel/autoconf:  2.13, 2.59-r7
sys-devel/automake:  1.4_p6, 1.5, 1.6.3, 1.7.9-r1, 1.8.5-r3, 1.9.6-r1
sys-devel/binutils:  2.16.1-r1
sys-devel/libtool:   1.5.22
virtual/os-headers:  2.6.11-r3
ACCEPT_KEYWORDS="amd64 ~amd64"
AUTOCLEAN="yes"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-O3 -pipe -march=k8"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/kde/2/share/config /usr/kde/3.4/env /usr/kde/3.4/share/config /usr/kde/3.4/shutdown /usr/kde/3.5/env /usr/kde/3.5/share/config /usr/kde/3.5/shutdown /usr/kde/3/share/config /usr/lib/X11/xkb /usr/share/config /var/qmail/control"
CONFIG_PROTECT_MASK="/etc/gconf /etc/terminfo /etc/texmf/web2c /etc/env.d"
CXXFLAGS="-O3 -pipe -march=k8"
DISTDIR="/usr/portage/distfiles"
FEATURES="autoconfig distlocks sandbox sfperms strict"
GENTOO_MIRRORS="ftp://gentoo.chem.wisc.edu/gentoo/"
MAKEOPTS="-j2"
PKGDIR="/usr/portage/packages"
PORTAGE_TMPDIR="/var/tmp"
PORTDIR="/usr/portage"
SYNC="rsync://rsync.us.gentoo.org/gentoo-portage"
USE="amd64 X a52 alsa apache2 avi bash-completion berkdb bitmap-fonts bzip2 cairo cdb cdr crypt ctype cups dba doc dvd dvi dynagraph eds emboss encode erandom esd examples extensions firefox flac foomaticdb fortran fpx gd-external gdbm gif glitz gnome gnutls gpm grammar graphvix graphviz gstreamer gtk gtk2 gtkhtml hal imlib java javascript jpeg jpeg2k kde kerberos krb4 lcms libgda linuxthreads-tls logmail logrotate lzw lzw-tiff mad maildir mailwrapper math motif mozilla mp3 mpeg mysql mysqli ncurses nls nptl nsplugin ogg opengl pam pam_chroot pam_console pam_timestamp pdf pdflib perl php plotutils png pwdb python qt quicktime readline sasl sdk sdl snmp spell sql ssl svg symlink t1lib tcltk tcpd tetex theora thesaurus threads tidy tiff toolbar truetype truetype-fonts type1-fonts urandom usb userlocales vorbis wmf xml xml2 xpm xv zip zlib elibc_glibc kernel_linux userland_GNU"
Unset:  ASFLAGS, CTARGET, EMERGE_DEFAULT_OPTS, LANG, LC_ALL, LDFLAGS, LINGUAS, PORTDIR_OVERLAY

[Comment 5 Chris Torske 2006-02-05 07:06:03 UTC]

Created attachment 78942 [details, diff]
isatty fix

I did a quick search on the web; and found a patch that worked for fixing this problem from the Conectiva Linux Distribution.  It is a old patch grabbed from their src rpm for doxygen-1.3.5; but it fixed the problem for me.  Please note; that this isn't a valid one for gentoo; so someone else will have to remake this patch in the proper format for us.

[Comment 6 SpanKY 2006-02-05 12:59:17 UTC]

does config.l include unistd.h ?  that should pull in the C definition for isatty

[Comment 7 Michael Cramer 2006-02-05 13:51:55 UTC]

file config.l in doxywizard directory doesn't include unistd.h 

[Comment 8 SpanKY 2006-02-05 19:41:52 UTC]

Created attachment 79002 [details, diff]
flex-2.5.31-isatty.patch

patch for flex that should fix this issue ...

[Comment 9 Michael Cramer 2006-02-06 08:43:52 UTC]

(In reply to comment #8)
> Created an attachment (id=79002) [edit]
> flex-2.5.31-isatty.patch
> 
> patch for flex that should fix this issue ...
> 

applied this patch to flex and doxywizard builds now

[Comment 10 SpanKY 2006-02-06 15:17:39 UTC]

added to 2.5.31-r1 then

[Comment 11 SpanKY 2006-02-08 18:46:16 UTC]

*** Bug 122042 has been marked as a duplicate of this bug. ***

[Comment 12 Steve Arnold 2006-02-11 15:28:36 UTC]

*** Bug 121987 has been marked as a duplicate of this bug. ***