Bugzilla Bug 119388

There are 37 of them accordingly to spyderous's list. I basically just grepped
for the sci in 2nd field. The list is at the end of message.

This is technically a feature request, but my understanding is that these
packages are blocking modular xorg from unmasking, so marking this with a
severity of normal..

George

sci-astronomy/stellarium sci mr_bones_
sci-biology/ariadne sci ribosome
sci-biology/bioperl-pipeline sci ribosome
sci-biology/clustalx sci ribosome
sci-biology/ncbi-tools sci ribosome
sci-biology/njplot sci ribosome
sci-biology/phylip sci ribosome
sci-biology/staden sci ribosome
sci-biology/vienna-rna sci ribosome
sci-chemistry/chemtool sci none
sci-chemistry/elem sci phosphan
sci-chemistry/molden sci spyderous
sci-chemistry/moldy sci spyderous
sci-chemistry/nmrpipe sci ribosome
sci-chemistry/nmrview sci ribosome
sci-chemistry/raster3d sci none
sci-electronics/chipmunksystem sci none
sci-electronics/geda sci plasmaroo
sci-electronics/geda-suite sci plasmaroo
sci-electronics/gerbv sci plasmaroo
sci-electronics/gtkwave sci plasmaroo
sci-electronics/pcb sci none
sci-electronics/spice sci none
sci-electronics/xcircuit sci plasmaroo
sci-geosciences/gpsd sci nerdboy
sci-geosciences/grass sci nerdboy
sci-libs/libgdgeda sci plasmaroo
sci-libs/libgeda sci plasmaroo
sci-libs/plplot sci cryos
sci-libs/root sci none
sci-libs/vtk sci pkdawson
sci-mathematics/axiom sci plasmaroo
sci-mathematics/euler sci none
sci-mathematics/geomview sci nerdboy
sci-misc/gwyddion sci cryos
sci-misc/ncview sci none
sci-misc/xfoil sci robbat2

(In reply to comment #0)
Fixed these:

> sci-chemistry/chemtool sci none
> sci-chemistry/molden sci spyderous
> sci-chemistry/moldy sci spyderous
> sci-chemistry/raster3d sci none
> sci-mathematics/euler sci none
> sci-misc/ncview sci none

(In reply to comment #0)
> This is technically a feature request, but my understanding is that these
> packages are blocking modular xorg from unmasking, so marking this with a
> severity of normal..

In the most technical sense, they aren't blocking it. They'll just all break
when I do unmask it unless they're ported. I won't be waiting for every app in
the tree to get ported beforehand; it's going to be a long asymptote, and it
will help discover which apps people actually care about.

Since I didn't follow the progress of modular X closely I am a bit lost now...
any link to some documentation how to find out which parts of modular X are
needed by a given application? Or emerge modular X and ldd happily around, then
check to which parts of X the dependencies belong?

(In reply to comment #3)
> Since I didn't follow the progress of modular X closely I am a bit lost now...
> any link to some documentation how to find out which parts of modular X are
> needed by a given application? Or emerge modular X and ldd happily around, then
> check to which parts of X the dependencies belong?

http://www.gentoo.org/proj/en/desktop/x/x11/modular-x-howto.xml is the users'
guide. You'll need to either install modular X yourself (in a chroot, if you
can't risk your main filesystem) or find someone with it installed to run the
necessary commands.

http://www.gentoo.org/proj/en/desktop/x/x11/porting-modular-x-howto.xml is the
developers' guide.

What won't the included scripts catch? Binaries/scripts run during the build
process, e.g. gccmakedep, imake, xmkmf.

(In reply to comment #4)
[hints to porting guides]

Thanks!

Here's the fixed, updated list:

dev-lang/gdl sci markusle
media-gfx/qmatplot sci none
sci-astronomy/stellarium sci mr_bones_
sci-biology/ariadne sci ribosome
sci-biology/bioperl-pipeline sci ribosome
sci-biology/clustalx sci ribosome
sci-biology/ncbi-tools sci ribosome
sci-biology/njplot sci ribosome
sci-biology/phylip sci ribosome
sci-biology/staden sci ribosome
sci-biology/vienna-rna sci ribosome
sci-calculators/hcalc sci none
sci-calculators/hexcalc sci none
sci-calculators/kunit sci none
sci-chemistry/elem sci phosphan
sci-chemistry/nmrpipe sci ribosome
sci-chemistry/nmrview sci ribosome
sci-electronics/chipmunksystem sci none
sci-electronics/geda sci plasmaroo
sci-electronics/geda-suite sci plasmaroo
sci-electronics/gerbv sci plasmaroo
sci-electronics/pcb sci none
sci-electronics/spice sci none
sci-electronics/xcircuit sci plasmaroo
sci-geosciences/gpsd sci nerdboy
sci-geosciences/grass sci nerdboy
sci-libs/libgdgeda sci plasmaroo
sci-libs/libgeda sci plasmaroo
sci-libs/plplot sci cryos
sci-libs/root sci none
sci-libs/vtk sci markusle
sci-mathematics/axiom sci plasmaroo
sci-mathematics/geomview sci nerdboy
sci-mathematics/maxima sci none
sci-mathematics/pariguide sci none
sci-mathematics/scilab sci none
sci-mathematics/snns sci phosphan
sci-misc/gwyddion sci cryos
sci-misc/xfoil sci robbat2
x11-misc/xaos sci none

Adding everyone who maintains a sci package but isn't on the sci alias.

Current list:

dev-lang/gdl sci markusle
sci-astronomy/stellarium sci mr_bones_
sci-biology/ariadne sci ribosome
sci-biology/bioperl-pipeline sci ribosome
sci-biology/clustalx sci ribosome
sci-biology/ncbi-tools sci ribosome
sci-biology/njplot sci ribosome
sci-biology/phylip sci ribosome
sci-biology/staden sci ribosome
sci-biology/vienna-rna sci ribosome
sci-chemistry/elem sci phosphan
sci-chemistry/nmrpipe sci ribosome
sci-chemistry/nmrview sci ribosome
sci-electronics/chipmunksystem sci none
sci-electronics/geda sci plasmaroo
sci-electronics/geda-suite sci plasmaroo
sci-electronics/gerbv sci plasmaroo
sci-electronics/pcb sci none
sci-electronics/spice sci none
sci-electronics/xcircuit sci plasmaroo
sci-geosciences/gpsd sci nerdboy
sci-geosciences/grass sci nerdboy
sci-libs/libgdgeda sci plasmaroo
sci-libs/libgeda sci plasmaroo
sci-libs/plplot sci cryos
sci-libs/root sci none
sci-libs/vtk sci markusle
sci-mathematics/axiom sci plasmaroo
sci-mathematics/geomview sci nerdboy
sci-mathematics/maxima sci none
sci-mathematics/pariguide sci none
sci-mathematics/snns sci phosphan
sci-misc/xfoil sci robbat2
x11-misc/xaos sci none

> sci-libs/vtk sci markusle
> sci-electronics/spice sci none

Done.

> sci-misc/xfoil sci robbat2
fixed.

Remaining:

sci-geosciences/grass sci nerdboy
sci-libs/plplot sci cryos

Only package still not ported to modular X:

sci-libs/plplot sci cryos

sci-libs/plplot is now ported. The DEPEND tree is very messy, so I didn't port
the older version - which should probably just be punted from the tree anyway.

Closing this bug since that was the last package to fix.