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Bug#: 115140
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Status: RESOLVED
Resolution: FIXED
Assigned To: Gentoo Science Related Packages <sci@gentoo.org>
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Reporter: Brady Catherman <gentoo@gecka.us>
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Filename Description Type Creator Created Size Actions
Rlog a scripted log of the entire build process. text/plain Brady Catherman 2005-12-12 08:51 0000 1.54 MB Details
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Bug 115140 depends on: Show dependency tree
Bug 115140 blocks:
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Additional Comments: (this is where you put emerge --info)


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Description:   Opened: 2005-12-10 16:59 0000 
After installing R the program "/usr/bin/R" still contains the temporary
install
directory in several places.
Lines 10-16
export R_HOME
R_SHARE_DIR=/var/tmp/portage/R-2.2.0/image//usr/lib/R/share
export R_SHARE_DIR
R_INCLUDE_DIR=/var/tmp/portage/R-2.2.0/image//usr/lib/R/include
export R_INCLUDE_DIR
R_DOC_DIR=/var/tmp/portage/R-2.2.0/image//usr/lib/R/doc
export R_DOC_DIR

After making this change everything seems to work perfectly.

------- Comment #1 From Marcus D. Hanwell 2005-12-12 06:52:14 0000 ------- 
I have been unable to reproduce this here, and the following lines in the  
ebuild should stop this from happening,  
  
    # fix the R wrapper script to have the correct R_HOME_DIR  
    # sed regexp borrowed from included debian rules  
    sed \  
        -e "/^R_HOME_DIR=.*/s::R_HOME_DIR=/usr/$(get_libdir)/R:" \  
        -i ${D}/usr/$(get_libdir)/R/bin/R \  
        || die "sed failed" 
 
Do you see any messages about the sed failing? I am guessing you are using 
dev-lang/R-2.2.0 and your emerge info may help.

------- Comment #2 From Brady Catherman 2005-12-12 08:51:25 0000 ------- 
Created an attachment (id=74583) [edit]
a scripted log of the entire build process.

This is a script generated by running the following commands:

script /tmp/Rlog
emerge -B R
emerge -K R
cat /usr/bin/R
logout


I don't see any sed errors or aything that would indicate that there is a
problem on my end. Though I didn't walk through every single line with a fine
tooth comb =)

------- Comment #3 From Marcus D. Hanwell 2005-12-12 11:57:43 0000 ------- 
I honestly thought I had added this to the tree already - sorry. Kugelfang beat 
me to adding R-2.2.0 and it appears I forgot to add the other fixes I had made. 
I have committed R-2.2.0-r1 to the tree now and it fixes the remaining paths 
now. Please let me know if this causes any more problems and thanks for 
reporting.

------- Comment #4 From Marcus D. Hanwell 2005-12-13 09:56:28 0000 ------- 
*** Bug 115430 has been marked as a duplicate of this bug. ***
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