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>>> emerge (1 of 79) sci-biology/treeviewx-0.5.1 to / >>> md5 files ;-) treeviewx-0.5.ebuild >>> md5 files ;-) treeviewx-0.5.1.ebuild >>> md5 files ;-) files/treeviewx-gcc-3.4.patch >>> md5 files ;-) files/digest-treeviewx-0.5 >>> md5 files ;-) files/treeviewx-wxt.patch >>> md5 files ;-) files/digest-treeviewx-0.5.1 >>> md5 src_uri ;-) tv-0.5.1.tar.gz >>> Unpacking source... >>> Unpacking tv-0.5.1.tar.gz to /var/tmp/portage/treeviewx-0.5.1/work * Applying treeviewx-wxt.patch ... [ ok ]>>> Source unpacked. ./configure --prefix=/usr --host=i686-pc-linux-gnu --mandir=/usr/share/man --infodir=/usr/share/info --datadir=/usr/share --sysconfdir=/etc --localstatedir=/var/lib --build=i686-pc-linux-gnu checking for a BSD-compatible install... /bin/install -c checking whether build environment is sane... yes checking for gawk... gawk checking whether make sets $(MAKE)... yes checking for i686-pc-linux-gnu-g++... i686-pc-linux-gnu-g++ checking for C++ compiler default output file name... a.out checking whether the C++ compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C++ compiler... yes checking whether i686-pc-linux-gnu-g++ accepts -g... yes checking for style of include used by make... GNU checking dependency style of i686-pc-linux-gnu-g++... gcc3 checking for a BSD-compatible install... /bin/install -c checking for i686-pc-linux-gnu-ranlib... i686-pc-linux-gnu-ranlib checking whether make sets $(MAKE)... (cached) yes checking for wx-config... /usr/bin/wx-config checking wxWindows version... 2.6.2 checking whether we will use SVG... yes checking for main in -lwx_base_svg-2.6... no configure: WARNING: "library required for SVG support not found" configure: creating ./config.status config.status: creating Makefile config.status: creating ncl-2.0/Makefile config.status: creating ncl-2.0/src/Makefile config.status: creating TreeLib/Makefile config.status: creating tv.spec config.status: executing depfiles commands Making all in ncl-2.0 make[1]: Entering directory `/var/tmp/portage/treeviewx-0.5.1/work/tv-0.5.1/ncl-2.0' Making all in src make[2]: Entering directory `/var/tmp/portage/treeviewx-0.5.1/work/tv-0.5.1/ncl-2.0/src' if i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"tv\" -DVERSION=\"0.5.1\" -I. -I. -Os -march=pentium4 -fomit-frame-pointer -pipe -Wno-deprecated -I/usr/lib/wx/include/base-ansi-release-2.6 -I/usr/include/wx-2.6 -DwxUSE_GUI=0 -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D_LARGEFILE_SOURCE=1 -DUSE_WXWINDOWS -DUSE_SVG -MT allelesblock.o -MD -MP -MF ".deps/allelesblock.Tpo" -c -o allelesblock.o allelesblock.cpp; \ then mv -f ".deps/allelesblock.Tpo" ".deps/allelesblock.Po"; else rm -f ".deps/allelesblock.Tpo"; exit 1; fi if i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"tv\" -DVERSION=\"0.5.1\" -I. -I. -Os -march=pentium4 -fomit-frame-pointer -pipe -Wno-deprecated -I/usr/lib/wx/include/base-ansi-release-2.6 -I/usr/include/wx-2.6 -DwxUSE_GUI=0 -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D_LARGEFILE_SOURCE=1 -DUSE_WXWINDOWS -DUSE_SVG -MT assumptionsblock.o -MD -MP -MF ".deps/assumptionsblock.Tpo" -c -o assumptionsblock.o assumptionsblock.cpp; \ then mv -f ".deps/assumptionsblock.Tpo" ".deps/assumptionsblock.Po"; else rm -f ".deps/assumptionsblock.Tpo"; exit 1; fi if i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"tv\" -DVERSION=\"0.5.1\" -I. -I. -Os -march=pentium4 -fomit-frame-pointer -pipe -Wno-deprecated -I/usr/lib/wx/include/base-ansi-release-2.6 -I/usr/include/wx-2.6 -DwxUSE_GUI=0 -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D_LARGEFILE_SOURCE=1 -DUSE_WXWINDOWS -DUSE_SVG -MT charactersblock.o -MD -MP -MF ".deps/charactersblock.Tpo" -c -o charactersblock.o charactersblock.cpp; \ then mv -f ".deps/charactersblock.Tpo" ".deps/charactersblock.Po"; else rm -f ".deps/charactersblock.Tpo"; exit 1; fi if i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"tv\" -DVERSION=\"0.5.1\" -I. -I. -Os -march=pentium4 -fomit-frame-pointer -pipe -Wno-deprecated -I/usr/lib/wx/include/base-ansi-release-2.6 -I/usr/include/wx-2.6 -DwxUSE_GUI=0 -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D_LARGEFILE_SOURCE=1 -DUSE_WXWINDOWS -DUSE_SVG -MT datablock.o -MD -MP -MF ".deps/datablock.Tpo" -c -o datablock.o datablock.cpp; \ then mv -f ".deps/datablock.Tpo" ".deps/datablock.Po"; else rm -f ".deps/datablock.Tpo"; exit 1; fi if i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"tv\" -DVERSION=\"0.5.1\" -I. -I. -Os -march=pentium4 -fomit-frame-pointer -pipe -Wno-deprecated -I/usr/lib/wx/include/base-ansi-release-2.6 -I/usr/include/wx-2.6 -DwxUSE_GUI=0 -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D_LARGEFILE_SOURCE=1 -DUSE_WXWINDOWS -DUSE_SVG -MT discretedatum.o -MD -MP -MF ".deps/discretedatum.Tpo" -c -o discretedatum.o discretedatum.cpp; \ then mv -f ".deps/discretedatum.Tpo" ".deps/discretedatum.Po"; else rm -f ".deps/discretedatum.Tpo"; exit 1; fi if i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"tv\" -DVERSION=\"0.5.1\" -I. -I. -Os -march=pentium4 -fomit-frame-pointer -pipe -Wno-deprecated -I/usr/lib/wx/include/base-ansi-release-2.6 -I/usr/include/wx-2.6 -DwxUSE_GUI=0 -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D_LARGEFILE_SOURCE=1 -DUSE_WXWINDOWS -DUSE_SVG -MT discretematrix.o -MD -MP -MF ".deps/discretematrix.Tpo" -c -o discretematrix.o discretematrix.cpp; \ then mv -f ".deps/discretematrix.Tpo" ".deps/discretematrix.Po"; else rm -f ".deps/discretematrix.Tpo"; exit 1; fi if i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"tv\" -DVERSION=\"0.5.1\" -I. -I. -Os -march=pentium4 -fomit-frame-pointer -pipe -Wno-deprecated -I/usr/lib/wx/include/base-ansi-release-2.6 -I/usr/include/wx-2.6 -DwxUSE_GUI=0 -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D_LARGEFILE_SOURCE=1 -DUSE_WXWINDOWS -DUSE_SVG -MT distancedatum.o -MD -MP -MF ".deps/distancedatum.Tpo" -c -o distancedatum.o distancedatum.cpp; \ then mv -f ".deps/distancedatum.Tpo" ".deps/distancedatum.Po"; else rm -f ".deps/distancedatum.Tpo"; exit 1; fi if i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"tv\" -DVERSION=\"0.5.1\" -I. -I. -Os -march=pentium4 -fomit-frame-pointer -pipe -Wno-deprecated -I/usr/lib/wx/include/base-ansi-release-2.6 -I/usr/include/wx-2.6 -DwxUSE_GUI=0 -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D_LARGEFILE_SOURCE=1 -DUSE_WXWINDOWS -DUSE_SVG -MT distancesblock.o -MD -MP -MF ".deps/distancesblock.Tpo" -c -o distancesblock.o distancesblock.cpp; \ then mv -f ".deps/distancesblock.Tpo" ".deps/distancesblock.Po"; else rm -f ".deps/distancesblock.Tpo"; exit 1; fi if i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"tv\" -DVERSION=\"0.5.1\" -I. -I. -Os -march=pentium4 -fomit-frame-pointer -pipe -Wno-deprecated -I/usr/lib/wx/include/base-ansi-release-2.6 -I/usr/include/wx-2.6 -DwxUSE_GUI=0 -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D_LARGEFILE_SOURCE=1 -DUSE_WXWINDOWS -DUSE_SVG -MT nexus.o -MD -MP -MF ".deps/nexus.Tpo" -c -o nexus.o nexus.cpp; \ then mv -f ".deps/nexus.Tpo" ".deps/nexus.Po"; else rm -f ".deps/nexus.Tpo"; exit 1; fi if i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"tv\" -DVERSION=\"0.5.1\" -I. -I. -Os -march=pentium4 -fomit-frame-pointer -pipe -Wno-deprecated -I/usr/lib/wx/include/base-ansi-release-2.6 -I/usr/include/wx-2.6 -DwxUSE_GUI=0 -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D_LARGEFILE_SOURCE=1 -DUSE_WXWINDOWS -DUSE_SVG -MT nexusblock.o -MD -MP -MF ".deps/nexusblock.Tpo" -c -o nexusblock.o nexusblock.cpp; \ then mv -f ".deps/nexusblock.Tpo" ".deps/nexusblock.Po"; else rm -f ".deps/nexusblock.Tpo"; exit 1; fi if i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"tv\" -DVERSION=\"0.5.1\" -I. -I. -Os -march=pentium4 -fomit-frame-pointer -pipe -Wno-deprecated -I/usr/lib/wx/include/base-ansi-release-2.6 -I/usr/include/wx-2.6 -DwxUSE_GUI=0 -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D_LARGEFILE_SOURCE=1 -DUSE_WXWINDOWS -DUSE_SVG -MT nexustoken.o -MD -MP -MF ".deps/nexustoken.Tpo" -c -o nexustoken.o nexustoken.cpp; \ then mv -f ".deps/nexustoken.Tpo" ".deps/nexustoken.Po"; else rm -f ".deps/nexustoken.Tpo"; exit 1; fi if i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"tv\" -DVERSION=\"0.5.1\" -I. -I. -Os -march=pentium4 -fomit-frame-pointer -pipe -Wno-deprecated -I/usr/lib/wx/include/base-ansi-release-2.6 -I/usr/include/wx-2.6 -DwxUSE_GUI=0 -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D_LARGEFILE_SOURCE=1 -DUSE_WXWINDOWS -DUSE_SVG -MT setreader.o -MD -MP -MF ".deps/setreader.Tpo" -c -o setreader.o setreader.cpp; \ then mv -f ".deps/setreader.Tpo" ".deps/setreader.Po"; else rm -f ".deps/setreader.Tpo"; exit 1; fi if i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"tv\" -DVERSION=\"0.5.1\" -I. -I. -Os -march=pentium4 -fomit-frame-pointer -pipe -Wno-deprecated -I/usr/lib/wx/include/base-ansi-release-2.6 -I/usr/include/wx-2.6 -DwxUSE_GUI=0 -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D_LARGEFILE_SOURCE=1 -DUSE_WXWINDOWS -DUSE_SVG -MT nxsstring.o -MD -MP -MF ".deps/nxsstring.Tpo" -c -o nxsstring.o nxsstring.cpp; \ then mv -f ".deps/nxsstring.Tpo" ".deps/nxsstring.Po"; else rm -f ".deps/nxsstring.Tpo"; exit 1; fi if i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"tv\" -DVERSION=\"0.5.1\" -I. -I. -Os -march=pentium4 -fomit-frame-pointer -pipe -Wno-deprecated -I/usr/lib/wx/include/base-ansi-release-2.6 -I/usr/include/wx-2.6 -DwxUSE_GUI=0 -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D_LARGEFILE_SOURCE=1 -DUSE_WXWINDOWS -DUSE_SVG -MT nxsdate.o -MD -MP -MF ".deps/nxsdate.Tpo" -c -o nxsdate.o nxsdate.cpp; \ then mv -f ".deps/nxsdate.Tpo" ".deps/nxsdate.Po"; else rm -f ".deps/nxsdate.Tpo"; exit 1; fi if i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"tv\" -DVERSION=\"0.5.1\" -I. -I. -Os -march=pentium4 -fomit-frame-pointer -pipe -Wno-deprecated -I/usr/lib/wx/include/base-ansi-release-2.6 -I/usr/include/wx-2.6 -DwxUSE_GUI=0 -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D_LARGEFILE_SOURCE=1 -DUSE_WXWINDOWS -DUSE_SVG -MT taxablock.o -MD -MP -MF ".deps/taxablock.Tpo" -c -o taxablock.o taxablock.cpp; \ then mv -f ".deps/taxablock.Tpo" ".deps/taxablock.Po"; else rm -f ".deps/taxablock.Tpo"; exit 1; fi if i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"tv\" -DVERSION=\"0.5.1\" -I. -I. -Os -march=pentium4 -fomit-frame-pointer -pipe -Wno-deprecated -I/usr/lib/wx/include/base-ansi-release-2.6 -I/usr/include/wx-2.6 -DwxUSE_GUI=0 -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D_LARGEFILE_SOURCE=1 -DUSE_WXWINDOWS -DUSE_SVG -MT treesblock.o -MD -MP -MF ".deps/treesblock.Tpo" -c -o treesblock.o treesblock.cpp; \ then mv -f ".deps/treesblock.Tpo" ".deps/treesblock.Po"; else rm -f ".deps/treesblock.Tpo"; exit 1; fi if i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"tv\" -DVERSION=\"0.5.1\" -I. -I. -Os -march=pentium4 -fomit-frame-pointer -pipe -Wno-deprecated -I/usr/lib/wx/include/base-ansi-release-2.6 -I/usr/include/wx-2.6 -DwxUSE_GUI=0 -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D_LARGEFILE_SOURCE=1 -DUSE_WXWINDOWS -DUSE_SVG -MT xnexus.o -MD -MP -MF ".deps/xnexus.Tpo" -c -o xnexus.o xnexus.cpp; \ then mv -f ".deps/xnexus.Tpo" ".deps/xnexus.Po"; else rm -f ".deps/xnexus.Tpo"; exit 1; fi rm -f libncl.a ar cru libncl.a allelesblock.o assumptionsblock.o charactersblock.o datablock.o discretedatum.o discretematrix.o distancedatum.o distancesblock.o nexus.o nexusblock.o nexustoken.o setreader.o nxsstring.o nxsdate.o taxablock.o treesblock.o xnexus.o i686-pc-linux-gnu-ranlib libncl.a make[2]: Leaving directory `/var/tmp/portage/treeviewx-0.5.1/work/tv-0.5.1/ncl-2.0/src' make[2]: Entering directory `/var/tmp/portage/treeviewx-0.5.1/work/tv-0.5.1/ncl-2.0' make[2]: Nothing to be done for `all-am'. make[2]: Leaving directory `/var/tmp/portage/treeviewx-0.5.1/work/tv-0.5.1/ncl-2.0' make[1]: Leaving directory `/var/tmp/portage/treeviewx-0.5.1/work/tv-0.5.1/ncl-2.0' Making all in TreeLib make[1]: Entering directory `/var/tmp/portage/treeviewx-0.5.1/work/tv-0.5.1/TreeLib' if i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"tv\" -DVERSION=\"0.5.1\" -I. -I. -Igport -Os -march=pentium4 -fomit-frame-pointer -pipe -Wno-deprecated -I/usr/lib/wx/include/base-ansi-release-2.6 -I/usr/include/wx-2.6 -DwxUSE_GUI=0 -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D_LARGEFILE_SOURCE=1 -DUSE_WXWINDOWS -DUSE_SVG -MT Parse.o -MD -MP -MF ".deps/Parse.Tpo" -c -o Parse.o Parse.cpp; \ then mv -f ".deps/Parse.Tpo" ".deps/Parse.Po"; else rm -f ".deps/Parse.Tpo"; exit 1; fi if i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"tv\" -DVERSION=\"0.5.1\" -I. -I. -Igport -Os -march=pentium4 -fomit-frame-pointer -pipe -Wno-deprecated -I/usr/lib/wx/include/base-ansi-release-2.6 -I/usr/include/wx-2.6 -DwxUSE_GUI=0 -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D_LARGEFILE_SOURCE=1 -DUSE_WXWINDOWS -DUSE_SVG -MT tokeniser.o -MD -MP -MF ".deps/tokeniser.Tpo" -c -o tokeniser.o tokeniser.cpp; \ then mv -f ".deps/tokeniser.Tpo" ".deps/tokeniser.Po"; else rm -f ".deps/tokeniser.Tpo"; exit 1; fi if i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"tv\" -DVERSION=\"0.5.1\" -I. -I. -Igport -Os -march=pentium4 -fomit-frame-pointer -pipe -Wno-deprecated -I/usr/lib/wx/include/base-ansi-release-2.6 -I/usr/include/wx-2.6 -DwxUSE_GUI=0 -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D_LARGEFILE_SOURCE=1 -DUSE_WXWINDOWS -DUSE_SVG -MT TreeLib.o -MD -MP -MF ".deps/TreeLib.Tpo" -c -o TreeLib.o TreeLib.cpp; \ then mv -f ".deps/TreeLib.Tpo" ".deps/TreeLib.Po"; else rm -f ".deps/TreeLib.Tpo"; exit 1; fi if i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"tv\" -DVERSION=\"0.5.1\" -I. -I. -Igport -Os -march=pentium4 -fomit-frame-pointer -pipe -Wno-deprecated -I/usr/lib/wx/include/base-ansi-release-2.6 -I/usr/include/wx-2.6 -DwxUSE_GUI=0 -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D_LARGEFILE_SOURCE=1 -DUSE_WXWINDOWS -DUSE_SVG -MT treedrawer.o -MD -MP -MF ".deps/treedrawer.Tpo" -c -o treedrawer.o treedrawer.cpp; \ then mv -f ".deps/treedrawer.Tpo" ".deps/treedrawer.Po"; else rm -f ".deps/treedrawer.Tpo"; exit 1; fi In file included from treedrawer.cpp:27: treedrawer.h:146: error: `wxDC' was not declared in this scope treedrawer.h:146: error: `wxdc' was not declared in this scope treedrawer.h:146: error: variable declaration is not allowed here treedrawer.h:146: error: syntax error before `{' token treedrawer.h: In member function `virtual void TreeDrawer::SetRect(int, int, int, int)': treedrawer.h:139: error: assignment of function `std::ios_base& std::left(std::ios_base&)' treedrawer.h:139: error: cannot convert `double' to ` std::ios_base&()(std::ios_base&)' in assignment treedrawer.h:140: error: `top' undeclared (first use this function) treedrawer.h:140: error: (Each undeclared identifier is reported only once for each function it appears in.) treedrawer.h:141: error: `width' undeclared (first use this function) treedrawer.h:142: error: `height' undeclared (first use this function) treedrawer.h: At global scope: treedrawer.h:156: error: virtual outside class declaration treedrawer.h: In function `void SetDrawRooted(bool)': treedrawer.h:156: error: `rooted' undeclared (first use this function) treedrawer.h: At global scope: treedrawer.h:160: error: virtual outside class declaration treedrawer.h: In function `void SetDrawInternalLabels(bool)': treedrawer.h:160: error: `showInternalLabels' undeclared (first use this function) treedrawer.h: At global scope: treedrawer.h:164: error: virtual outside class declaration treedrawer.h: In function `void SetDrawLeafLabels(bool)': treedrawer.h:164: error: `showLeafLabels' undeclared (first use this function) treedrawer.h: At global scope: treedrawer.h:166: error: virtual outside class declaration treedrawer.h:168: error: syntax error before `protected' treedrawer.h:171: error: `double top' used prior to declaration treedrawer.h:171: error: `double width' used prior to declaration treedrawer.h:171: error: `double height' used prior to declaration treedrawer.h:174: error: `bool rooted' used prior to declaration treedrawer.h:175: error: `bool showInternalLabels' used prior to declaration treedrawer.h:176: error: `bool showLeafLabels' used prior to declaration treedrawer.h:183: error: syntax error before `*' token treedrawer.cpp: In constructor `TreeDrawer::TreeDrawer(Tree*)': treedrawer.cpp:39: error: `t' undeclared (first use this function) treedrawer.cpp:43: error: use of `left' is ambiguous treedrawer.h:171: error: first declared as `double left' here /usr/lib/gcc-lib/i686-pc-linux-gnu/3.3.6/include/g++-v3/bits/ios_base.h:800: error: also declared as `std::ios_base& std::left(std::ios_base&)' here treedrawer.cpp: In member function `virtual void TreeDrawer::CalcLeaf(Node*)': treedrawer.cpp:69: error: use of `left' is ambiguous treedrawer.h:171: error: first declared as `double left' here /usr/lib/gcc-lib/i686-pc-linux-gnu/3.3.6/include/g++-v3/bits/ios_base.h:800: error: also declared as `std::ios_base& std::left(std::ios_base&)' here treedrawer.cpp: In member function `virtual void TreeDrawer::CalcInternal(Node*)': treedrawer.cpp:76: error: use of `left' is ambiguous treedrawer.h:171: error: first declared as `double left' here /usr/lib/gcc-lib/i686-pc-linux-gnu/3.3.6/include/g++-v3/bits/ios_base.h:800: error: also declared as `std::ios_base& std::left(std::ios_base&)' here treedrawer.cpp: In member function `virtual void TreeDrawer::CalcCoordinates() ': treedrawer.cpp:97: error: use of `left' is ambiguous treedrawer.h:171: error: first declared as `double left' here /usr/lib/gcc-lib/i686-pc-linux-gnu/3.3.6/include/g++-v3/bits/ios_base.h:800: error: also declared as `std::ios_base& std::left(std::ios_base&)' here treedrawer.cpp: In member function `virtual void TreeDrawer::DrawLine(point, point)': treedrawer.cpp:206: error: `dc' undeclared (first use this function) treedrawer.cpp: At global scope: treedrawer.cpp:265: error: no `void TreeDrawer::SetPenWidth(int)' member function declared in class `TreeDrawer' treedrawer.cpp: In member function `virtual void RectangleTreeDrawer::CalcCoordinates()': treedrawer.cpp:314: error: use of `left' is ambiguous treedrawer.h:171: error: first declared as `double left' here /usr/lib/gcc-lib/i686-pc-linux-gnu/3.3.6/include/g++-v3/bits/ios_base.h:800: error: also declared as `std::ios_base& std::left(std::ios_base&)' here treedrawer.cpp: In member function `virtual void RectangleTreeDrawer::CalcInternal(Node*)': treedrawer.cpp:341: error: use of `left' is ambiguous treedrawer.h:171: error: first declared as `double left' here /usr/lib/gcc-lib/i686-pc-linux-gnu/3.3.6/include/g++-v3/bits/ios_base.h:800: error: also declared as `std::ios_base& std::left(std::ios_base&)' here treedrawer.cpp: In member function `virtual void PhylogramDrawer::CalcInternal(Node*)': treedrawer.cpp:475: error: use of `left' is ambiguous treedrawer.h:171: error: first declared as `double left' here /usr/lib/gcc-lib/i686-pc-linux-gnu/3.3.6/include/g++-v3/bits/ios_base.h:800: error: also declared as `std::ios_base& std::left(std::ios_base&)' here treedrawer.cpp: In member function `virtual void PhylogramDrawer::CalcLeaf(Node*)': treedrawer.cpp:485: error: use of `left' is ambiguous treedrawer.h:171: error: first declared as `double left' here /usr/lib/gcc-lib/i686-pc-linux-gnu/3.3.6/include/g++-v3/bits/ios_base.h:800: error: also declared as `std::ios_base& std::left(std::ios_base&)' here treedrawer.cpp: In member function `virtual void PhylogramDrawer::DrawScaleBar()': treedrawer.cpp:515: error: `wxPen' undeclared (first use this function) treedrawer.cpp:515: error: syntax error before `(' token treedrawer.cpp:516: error: `scale_pen' undeclared (first use this function) treedrawer.cpp:523: error: use of `left' is ambiguous treedrawer.h:171: error: first declared as `double left' here /usr/lib/gcc-lib/i686-pc-linux-gnu/3.3.6/include/g++-v3/bits/ios_base.h:800: error: also declared as `std::ios_base& std::left(std::ios_base&)' here treedrawer.cpp:525: error: use of `left' is ambiguous treedrawer.h:171: error: first declared as `double left' here /usr/lib/gcc-lib/i686-pc-linux-gnu/3.3.6/include/g++-v3/bits/ios_base.h:800: error: also declared as `std::ios_base& std::left(std::ios_base&)' here treedrawer.cpp:537: error: use of `left' is ambiguous treedrawer.h:171: error: first declared as `double left' here /usr/lib/gcc-lib/i686-pc-linux-gnu/3.3.6/include/g++-v3/bits/ios_base.h:800: error: also declared as `std::ios_base& std::left(std::ios_base&)' here treedrawer.cpp:587: error: use of `left' is ambiguous treedrawer.h:171: error: first declared as `double left' here /usr/lib/gcc-lib/i686-pc-linux-gnu/3.3.6/include/g++-v3/bits/ios_base.h:800: error: also declared as `std::ios_base& std::left(std::ios_base&)' here treedrawer.cpp: In member function `virtual void CircleTreeDrawer::CalcCoordinates()': treedrawer.cpp:687: error: use of `left' is ambiguous treedrawer.h:171: error: first declared as `double left' here /usr/lib/gcc-lib/i686-pc-linux-gnu/3.3.6/include/g++-v3/bits/ios_base.h:800: error: also declared as `std::ios_base& std::left(std::ios_base&)' here treedrawer.cpp:712: error: use of `left' is ambiguous treedrawer.h:171: error: first declared as `double left' here /usr/lib/gcc-lib/i686-pc-linux-gnu/3.3.6/include/g++-v3/bits/ios_base.h:800: error: also declared as `std::ios_base& std::left(std::ios_base&)' here make[1]: *** [treedrawer.o] Error 1 make[1]: Leaving directory `/var/tmp/portage/treeviewx-0.5.1/work/tv-0.5.1/TreeLib' make: *** [all-recursive] Error 1 !!! ERROR: sci-biology/treeviewx-0.5.1 failed. !!! Function src_compile, Line 566, Exitcode 2 !!! emake failed !!! If you need support, post the topmost build error, NOT this status message. Portage 2.0.53_rc7 (default-linux/x86/2005.1, gcc-3.3.6, glibc-2.3.5-r3, 2.6.9-22.ELsmp i686) ================================================================= System uname: 2.6.9-22.ELsmp i686 Intel(R) Xeon(TM) CPU 2.80GHz Gentoo Base System version 1.12.0_pre10 dev-lang/python: 2.3.5, 2.4.2 sys-apps/sandbox: 1.2.11 sys-devel/autoconf: 2.13, 2.59-r7 sys-devel/automake: 1.4_p6, 1.5, 1.6.3, 1.7.9-r1, 1.8.5-r3, 1.9.6-r1 sys-devel/binutils: 2.16.1 sys-devel/libtool: 1.5.20-r1 virtual/os-headers: 2.6.11-r2 ACCEPT_KEYWORDS="x86 ~x86" AUTOCLEAN="yes" CBUILD="i686-pc-linux-gnu" CFLAGS="-Os -march=pentium4 -fomit-frame-pointer -pipe" CHOST="i686-pc-linux-gnu" CONFIG_PROTECT="/etc /usr/kde/2/share/config /usr/kde/3/share/config /usr/share/config /var/qmail/control" CONFIG_PROTECT_MASK="/etc/gconf /etc/terminfo /etc/env.d" CXXFLAGS="-Os -march=pentium4 -fomit-frame-pointer -pipe" DISTDIR="/usr/portage/distfiles" FEATURES="autoconfig distlocks sandbox sfperms strict" GENTOO_MIRRORS="http://distfiles.gentoo.org http://distro.ibiblio.org/pub/linux/distributions/gentoo" LANG="en_US.UTF-8" PKGDIR="/usr/portage/packages" PORTAGE_TMPDIR="/var/tmp" PORTDIR="/usr/portage" PORTDIR_OVERLAY="" SYNC="rsync://rsync.gentoo.org/gentoo-portage" USE="x86 a52 aac aalib accessibility acpi apache2 apm bash-completion bcmath blas bmp bzip2 crypt cscope ctype curl curlwrappers doc dv emacs emboss empress empress-bcs encode ethereal examples exif fastcgi ffmpeg fftw flac fortran gif ginac gmp java javascript jpeg ldap leim lm_sesnsors mad ming mmap mmx mng mono mozilla mp3 mpeg mpi ncurses netboot nptl nsplugin ogg pam pcre pdflib perl png python quicktime readline ruby spell sse ssl tiff truetype vorbis wmf xml2 zlib userland_GNU kernel_linux elibc_glibc" Unset: ASFLAGS, CTARGET, LC_ALL, LDFLAGS, LINGUAS, MAKEOPTS The only thing I have done on this system is recompile a stage3 install, then compile a series of console utilities. Now I am compiling our cluster utilities and treeviewx fails to build.
Hi Brady, Compiles fine for me using gcc-3.3.6 and gcc-3.4.4. From the output you posted it seems that there is a problem with your libwx_gtk2u_svg-2.6.so >checking for main in -lwx_base_svg-2.6... no >configure: WARNING: "library required for SVG support not found" Please try re-emerging x11-libs/wxGTK and then treeviewx and report back. Thanks!
The SVG library that TreeViewX tries to use is part of the optional X support in wxGTK. Since you do not have X in your USE flags, wxGTK only compiled the basic library with no GUI. You need to recompile wxGTK with the "X" USE flag enabled to install TreeViewx. Since Portage cannot depend on a package built with a given USE flag, there is no clean solution to this. I have added a check to the ebuild to raise an error and tell the user what to do when X support is missing from wxGTK. I suggest to not install TreeViewX on your cluster if you do not want to have X installed. (TreeViewX does not do any calculation anyway; it is only for graphical analysis, which can be done on any X-enabled workstation.)
Hey its on my "Things that need to be installed on our cluster" list so I don't really have a choice. Knowing this I will put a custom use flag on the wxGTK file in /etc/portage/package.use and call it good. Thank you for yhour speedy reply to this =)